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RADICL-seq identifies general and cell type–specific principles of genome-wide RNA-chromatin interactions
https://oist.repo.nii.ac.jp/records/1682
https://oist.repo.nii.ac.jp/records/1682f7ed9d2f-0a2c-409b-9daa-a856d9fa0e28
名前 / ファイル | ライセンス | アクション |
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Bonetti-2020-RADICL-seq identifies general and (2.5 MB)
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Creative Commons Attribution 4.0 International(https://creativecommons.org/licenses/by/4.0/)
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s41467-021-23542-w (549.0 kB)
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Creative Commons Attribution 4.0 International (https://creativecommons.org/licenses/by/4.0/)
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Item type | 学術雑誌論文 / Journal Article(1) | |||||
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公開日 | 2020-08-19 | |||||
タイトル | ||||||
言語 | en | |||||
タイトル | RADICL-seq identifies general and cell type–specific principles of genome-wide RNA-chromatin interactions | |||||
言語 | ||||||
言語 | eng | |||||
資源タイプ | ||||||
資源タイプ識別子 | http://purl.org/coar/resource_type/c_6501 | |||||
資源タイプ | journal article | |||||
著者(英) |
Bonetti, Alessandro
× Bonetti, Alessandro× Agostini, Federico× Suzuki, Ana Maria× Hashimoto, Kosuke× Pascarella, Giovanni× Gimenez, Juliette× Roos, Leonie× Nash, Alex J.× Ghilotti, Marco× Cameron, Christopher J. F.× Valentine, Matthew× Medvedeva, Yulia A.× Noguchi, Shuhei× Agirre, Eneritz× Kashi, Kaori× Samudyata× Luginbühl, Joachim× Cazzoli, Riccardo× Agrawal, Saumya× Luscombe, Nicholas M.× Blanchette, Mathieu× Kasukawa, Takeya× Hoon, Michiel de× Arner, Erik× Lenhard, Boris× Plessy, Charles× Castelo-Branco, Gonçalo× Orlando, Valerio× Carninci, Piero |
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書誌情報 |
en : Nature Communications 巻 11, 号 1, p. 1018, 発行日 2020-02-24 |
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抄録 | ||||||
内容記述タイプ | Other | |||||
内容記述 | Mammalian genomes encode tens of thousands of noncoding RNAs. Most noncoding transcripts exhibit nuclear localization and several have been shown to play a role in the regulation of gene expression and chromatin remodeling. To investigate the function of such RNAs, methods to massively map the genomic interacting sites of multiple transcripts have been developed; however, these methods have some limitations. Here, we introduce RNA And DNA Interacting Complexes Ligated and sequenced (RADICL-seq), a technology that maps genome-wide RNA-chromatin interactions in intact nuclei. RADICL-seq is a proximity ligation-based methodology that reduces the bias for nascent transcription, while increasing genomic coverage and unique mapping rate efficiency compared with existing methods. RADICL-seq identifies distinct patterns of genome occupancy for different classes of transcripts as well as cell type-specific RNA-chromatin interactions, and highlights the role of transcription in the establishment of chromatin structure. | |||||
出版者 | ||||||
出版者 | Nature Research | |||||
ISSN | ||||||
収録物識別子タイプ | ISSN | |||||
収録物識別子 | 2041-1723 | |||||
PubMed番号 | ||||||
関連タイプ | isIdenticalTo | |||||
識別子タイプ | PMID | |||||
関連識別子 | info:pmid/32094342 | |||||
DOI | ||||||
関連タイプ | isIdenticalTo | |||||
識別子タイプ | DOI | |||||
関連識別子 | info:doi/10.1038/s41467-020-14337-6 | |||||
権利 | ||||||
権利情報 | © 2020 The Author(s) | |||||
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識別子タイプ | URI | |||||
関連識別子 | https://www.nature.com/articles/s41467-020-14337-6 | |||||
関連名称 | First published article | |||||
関連サイト | ||||||
識別子タイプ | URI | |||||
関連識別子 | https://www.nature.com/articles/s41467-021-23542-w | |||||
関連名称 | Correction | |||||
著者版フラグ | ||||||
出版タイプ | VoR | |||||
出版タイプResource | http://purl.org/coar/version/c_970fb48d4fbd8a85 |