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Among Oikopleuridae, we suggest further possible changes in the use of the ATA (Ile → Met) and TGA (Trp → Arg) codons. Conclusions:We recommend using the ascidian mitochondrial code inConclusions: automatic translation pipelines of mitochondrial sequences for all tunicates. 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Widespread use of the “ascidian” mitochondrial genetic code in tunicates
https://oist.repo.nii.ac.jp/records/1696
https://oist.repo.nii.ac.jp/records/16967988ede4-1fef-4767-89d5-ada59ab5cbb2
名前 / ファイル | ライセンス | アクション |
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5ad068c7-eae0-49da-8063-2f90d52ea771_21551_-_charles_plessy (1.6 MB)
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Creative Commons Attribution 4.0 International(https://creativecommons.org/licenses/by/4.0/)
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Item type | 学術雑誌論文 / Journal Article(1) | |||||
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公開日 | 2020-09-10 | |||||
タイトル | ||||||
言語 | en | |||||
タイトル | Widespread use of the “ascidian” mitochondrial genetic code in tunicates | |||||
言語 | ||||||
言語 | eng | |||||
キーワード | ||||||
言語 | en | |||||
主題Scheme | Other | |||||
主題 | Tunicate | |||||
キーワード | ||||||
言語 | en | |||||
主題Scheme | Other | |||||
主題 | Oikopleura | |||||
キーワード | ||||||
言語 | en | |||||
主題Scheme | Other | |||||
主題 | Genetic code | |||||
キーワード | ||||||
言語 | en | |||||
主題Scheme | Other | |||||
主題 | Mitochondria | |||||
キーワード | ||||||
言語 | en | |||||
主題Scheme | Other | |||||
主題 | Cytochrome oxidase subunit I | |||||
資源タイプ | ||||||
資源タイプ識別子 | http://purl.org/coar/resource_type/c_6501 | |||||
資源タイプ | journal article | |||||
著者(英) |
Pichon, Julien
× Pichon, Julien× Luscombe, Nicholas M.× Plessy, Charles |
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書誌情報 |
en : F1000Research 巻 8, p. 2072, 発行日 2019-12-10 |
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抄録 | ||||||
内容記述タイプ | Other | |||||
内容記述 | Background:Ascidians, a tunicate class, use a mitochondrial genetic codeBackground: that is distinct from vertebrates and other invertebrates. Though it has been used to translate the coding sequences from other tunicate species on a case-by-case basis, it is has not been investigated whether this can be done systematically. This is an important because a) some tunicate mitochondrial sequences are currently translated with the invertebrate code by repositories such as NCBI GenBank, and b) uncertainties about the genetic code to use can complicate or introduce errors in phylogenetic studies based on translated mitochondrial protein sequences. Methods:We collected publicly available nucleotide sequences forMethods: non-ascidian tunicates including appendicularians such as Oikopleura dioica, translated them using the ascidian mitochondrial code, and built multiple sequence alignments covering all tunicate classes. Results:All tunicates studied here appear to translate AGR codons toResults: glycine instead of serine (invertebrates) or as a stop codon (vertebrates), as initially described in ascidians. Among Oikopleuridae, we suggest further possible changes in the use of the ATA (Ile → Met) and TGA (Trp → Arg) codons. Conclusions:We recommend using the ascidian mitochondrial code inConclusions: automatic translation pipelines of mitochondrial sequences for all tunicates. Further investigation is required for additional species-specific differences. | |||||
出版者 | ||||||
出版者 | F1000Research | |||||
ISSN | ||||||
収録物識別子タイプ | ISSN | |||||
収録物識別子 | 2046-1402 | |||||
PubMed番号 | ||||||
関連タイプ | isIdenticalTo | |||||
識別子タイプ | PMID | |||||
関連識別子 | info:pmid/32148763 | |||||
DOI | ||||||
関連タイプ | isIdenticalTo | |||||
識別子タイプ | DOI | |||||
関連識別子 | info:doi/10.12688/f1000research.21551.1 | |||||
権利 | ||||||
権利情報 | © 2019 Pichon J et al. | |||||
関連サイト | ||||||
識別子タイプ | DOI | |||||
関連識別子 | https://doi.org/10.12688/f1000research.21551.1 | |||||
関連名称 | First published | |||||
関連サイト | ||||||
識別子タイプ | DOI | |||||
関連識別子 | https://doi.org/10.12688/f1000research.21551.2 | |||||
関連名称 | Latest published | |||||
著者版フラグ | ||||||
出版タイプ | VoR | |||||
出版タイプResource | http://purl.org/coar/version/c_970fb48d4fbd8a85 |