WEKO3
アイテム
{"_buckets": {"deposit": "3c327dc8-1913-46a7-9b64-710a467bfe4d"}, "_deposit": {"created_by": 28, "id": "999", "owners": [28], "pid": {"revision_id": 0, "type": "depid", "value": "999"}, "status": "published"}, "_oai": {"id": "oai:oist.repo.nii.ac.jp:00000999", "sets": ["51"]}, "author_link": ["5497", "5494", "5496", "5499", "5498", "5500", "5495"], "item_10001_biblio_info_7": {"attribute_name": "Bibliographic Information", "attribute_value_mlt": [{"bibliographicIssueDates": {"bibliographicIssueDate": "2019-03-14", "bibliographicIssueDateType": "Issued"}, "bibliographicIssueNumber": "1", "bibliographicPageStart": "4607", "bibliographicVolumeNumber": "9", "bibliographic_titles": [{}, {"bibliographic_title": "Scientific Reports", "bibliographic_titleLang": "en"}]}]}, "item_10001_creator_3": {"attribute_name": "Author", "attribute_type": "creator", "attribute_value_mlt": [{"creatorNames": [{"creatorName": "Nishitsuji, Koki"}], "nameIdentifiers": [{"nameIdentifier": "5494", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Arimoto, Asuka"}], "nameIdentifiers": [{"nameIdentifier": "5495", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Higa, Yoshimi"}], "nameIdentifiers": [{"nameIdentifier": "5496", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Mekaru, Munekazu"}], "nameIdentifiers": [{"nameIdentifier": "5497", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Kawamitsu, Mayumi"}], "nameIdentifiers": [{"nameIdentifier": "5498", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Satoh, Noriyuki"}], "nameIdentifiers": [{"nameIdentifier": "5499", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Shoguchi, Eiichi"}], "nameIdentifiers": [{"nameIdentifier": "5500", "nameIdentifierScheme": "WEKO"}]}]}, "item_10001_description_5": {"attribute_name": "Abstract", "attribute_value_mlt": [{"subitem_description": "The brown alga, Nemacystus decipiens (\"ito-mozuku\" in Japanese), is one of the major edible seaweeds, cultivated principally in Okinawa, Japan. N. decipiens is also a significant source of fucoidan, which has various physiological activities. To facilitate brown algal studies, we decoded the ~154 Mbp draft genome of N. decipiens Onna-1 strain. The genome is estimated to contain 15,156 protein-coding genes, ~78% of which are substantiated by corresponding mRNAs. Mitochondrial genes analysis showed a close relationship between N. decipiens and Cladosiphon okamuranus. Comparisons with the C. okamuranus and Ectocarpus siliculosus genomes identified a set of N. decipiens-specific genes. Gene ontology annotation showed more than half of these are classified as molecular function, enzymatic activity, and/or biological process. Extracellular matrix analysis revealed domains shared among three brown algae. Characterization of genes that encode enzymes involved in the biosynthetic pathway for sulfated fucan showed two sets of genes fused in the genome. One is a fusion of L-fucokinase and GDP-fucose pyrophosphorylase genes, a feature shared with C. okamuranus. Another fusion is between an ST-domain-containing gene and an alpha/beta hydrolase gene. Although the function of fused genes should be examined in future, these results suggest that N. decipiens is another promising source of fucoidan.", "subitem_description_type": "Other"}]}, "item_10001_publisher_8": {"attribute_name": "Publisher", "attribute_value_mlt": [{"subitem_publisher": "Nature Research"}]}, "item_10001_relation_13": {"attribute_name": "PubMedNo.", "attribute_value_mlt": [{"subitem_relation_type": "isIdenticalTo", "subitem_relation_type_id": {"subitem_relation_type_id_text": "info:pmid/30872679", "subitem_relation_type_select": "PMID"}}]}, "item_10001_relation_14": {"attribute_name": "DOI", "attribute_value_mlt": [{"subitem_relation_type": "isIdenticalTo", "subitem_relation_type_id": {"subitem_relation_type_id_text": "info:doi/10.1038/s41598-019-40955-2", "subitem_relation_type_select": "DOI"}}]}, "item_10001_relation_16": {"attribute_name": "情報源", "attribute_value_mlt": [{"subitem_relation_name": [{"subitem_relation_name_text": "https://creativecommons.org/licenses/by/4.0/"}]}]}, "item_10001_relation_17": {"attribute_name": "Related site", "attribute_value_mlt": [{"subitem_relation_type_id": {"subitem_relation_type_id_text": "https://www.nature.com/articles/s41598-019-40955-2", "subitem_relation_type_select": "URI"}}]}, "item_10001_rights_15": {"attribute_name": "Rights", "attribute_value_mlt": [{"subitem_rights": "© 2019 The Author(s)."}]}, "item_10001_source_id_9": {"attribute_name": "ISSN", "attribute_value_mlt": [{"subitem_source_identifier": "2045-2322", "subitem_source_identifier_type": "ISSN"}]}, "item_10001_version_type_20": {"attribute_name": "Author\u0027s flag", "attribute_value_mlt": [{"subitem_version_resource": "http://purl.org/coar/version/c_970fb48d4fbd8a85", "subitem_version_type": "VoR"}]}, "item_files": {"attribute_name": "ファイル情報", "attribute_type": "file", "attribute_value_mlt": [{"accessrole": "open_date", "date": [{"dateType": "Available", "dateValue": "2019-07-08"}], "displaytype": "detail", "download_preview_message": "", "file_order": 0, "filename": "Nishitsuji-2019-Draft genome of the brown alga.pdf", "filesize": [{"value": "2.7 MB"}], "format": "application/pdf", "future_date_message": "", "is_thumbnail": false, "licensefree": "Creative Commons\nAttribution 4.0 International\n(https://creativecommons.org/licenses/by/4.0/)", "licensetype": "license_free", "mimetype": "application/pdf", "size": 2700000.0, "url": {"label": "Nishitsuji-2019-Draft genome of the brown alga", "url": "https://oist.repo.nii.ac.jp/record/999/files/Nishitsuji-2019-Draft genome of the brown alga.pdf"}, "version_id": "9233997b-dee8-4b60-bd34-e6e9f7228f4b"}]}, "item_language": {"attribute_name": "言語", "attribute_value_mlt": [{"subitem_language": "eng"}]}, "item_resource_type": {"attribute_name": "資源タイプ", "attribute_value_mlt": [{"resourcetype": "journal article", "resourceuri": "http://purl.org/coar/resource_type/c_6501"}]}, "item_title": "Draft genome of the brown alga, Nemacystus decipiens, Onna-1 strain: Fusion of genes involved in the sulfated fucan biosynthesis pathway", "item_titles": {"attribute_name": "タイトル", "attribute_value_mlt": [{"subitem_title": "Draft genome of the brown alga, Nemacystus decipiens, Onna-1 strain: Fusion of genes involved in the sulfated fucan biosynthesis pathway", "subitem_title_language": "en"}]}, "item_type_id": "10001", "owner": "28", "path": ["51"], "permalink_uri": "https://oist.repo.nii.ac.jp/records/999", "pubdate": {"attribute_name": "公開日", "attribute_value": "2019-07-08"}, "publish_date": "2019-07-08", "publish_status": "0", "recid": "999", "relation": {}, "relation_version_is_last": true, "title": ["Draft genome of the brown alga, Nemacystus decipiens, Onna-1 strain: Fusion of genes involved in the sulfated fucan biosynthesis pathway"], "weko_shared_id": 28}
Draft genome of the brown alga, Nemacystus decipiens, Onna-1 strain: Fusion of genes involved in the sulfated fucan biosynthesis pathway
https://oist.repo.nii.ac.jp/records/999
https://oist.repo.nii.ac.jp/records/999846091d0-406f-41e1-a520-356134ee6acf
名前 / ファイル | ライセンス | アクション |
---|---|---|
Nishitsuji-2019-Draft genome of the brown alga (2.7 MB)
|
Creative Commons
Attribution 4.0 International (https://creativecommons.org/licenses/by/4.0/) |
Item type | 学術雑誌論文 / Journal Article(1) | |||||
---|---|---|---|---|---|---|
公開日 | 2019-07-08 | |||||
タイトル | ||||||
言語 | en | |||||
タイトル | Draft genome of the brown alga, Nemacystus decipiens, Onna-1 strain: Fusion of genes involved in the sulfated fucan biosynthesis pathway | |||||
言語 | ||||||
言語 | eng | |||||
資源タイプ | ||||||
資源タイプ識別子 | http://purl.org/coar/resource_type/c_6501 | |||||
資源タイプ | journal article | |||||
著者(英) |
Nishitsuji, Koki
× Nishitsuji, Koki× Arimoto, Asuka× Higa, Yoshimi× Mekaru, Munekazu× Kawamitsu, Mayumi× Satoh, Noriyuki× Shoguchi, Eiichi |
|||||
書誌情報 |
en : Scientific Reports 巻 9, 号 1, p. 4607, 発行日 2019-03-14 |
|||||
抄録 | ||||||
内容記述タイプ | Other | |||||
内容記述 | The brown alga, Nemacystus decipiens ("ito-mozuku" in Japanese), is one of the major edible seaweeds, cultivated principally in Okinawa, Japan. N. decipiens is also a significant source of fucoidan, which has various physiological activities. To facilitate brown algal studies, we decoded the ~154 Mbp draft genome of N. decipiens Onna-1 strain. The genome is estimated to contain 15,156 protein-coding genes, ~78% of which are substantiated by corresponding mRNAs. Mitochondrial genes analysis showed a close relationship between N. decipiens and Cladosiphon okamuranus. Comparisons with the C. okamuranus and Ectocarpus siliculosus genomes identified a set of N. decipiens-specific genes. Gene ontology annotation showed more than half of these are classified as molecular function, enzymatic activity, and/or biological process. Extracellular matrix analysis revealed domains shared among three brown algae. Characterization of genes that encode enzymes involved in the biosynthetic pathway for sulfated fucan showed two sets of genes fused in the genome. One is a fusion of L-fucokinase and GDP-fucose pyrophosphorylase genes, a feature shared with C. okamuranus. Another fusion is between an ST-domain-containing gene and an alpha/beta hydrolase gene. Although the function of fused genes should be examined in future, these results suggest that N. decipiens is another promising source of fucoidan. | |||||
出版者 | ||||||
出版者 | Nature Research | |||||
ISSN | ||||||
収録物識別子タイプ | ISSN | |||||
収録物識別子 | 2045-2322 | |||||
PubMed番号 | ||||||
関連タイプ | isIdenticalTo | |||||
識別子タイプ | PMID | |||||
関連識別子 | info:pmid/30872679 | |||||
DOI | ||||||
関連タイプ | isIdenticalTo | |||||
識別子タイプ | DOI | |||||
関連識別子 | info:doi/10.1038/s41598-019-40955-2 | |||||
権利 | ||||||
権利情報 | © 2019 The Author(s). | |||||
情報源 | ||||||
関連名称 | https://creativecommons.org/licenses/by/4.0/ | |||||
関連サイト | ||||||
識別子タイプ | URI | |||||
関連識別子 | https://www.nature.com/articles/s41598-019-40955-2 | |||||
著者版フラグ | ||||||
出版タイプ | VoR | |||||
出版タイプResource | http://purl.org/coar/version/c_970fb48d4fbd8a85 |