WEKO3
アイテム
{"_buckets": {"deposit": "e8749a56-6285-4eb2-9090-b4704b1ca448"}, "_deposit": {"created_by": 28, "id": "1031", "owners": [28], "pid": {"revision_id": 0, "type": "depid", "value": "1031"}, "status": "published"}, "_oai": {"id": "oai:oist.repo.nii.ac.jp:00001031", "sets": ["52"]}, "author_link": ["5693", "5694", "5688", "5696", "5699", "5692", "5702", "5698", "5689", "5690", "5697", "5701", "5695", "5691", "5700"], "item_10001_biblio_info_7": {"attribute_name": "Bibliographic Information", "attribute_value_mlt": [{"bibliographicIssueDates": {"bibliographicIssueDate": "2019-06-26", "bibliographicIssueDateType": "Issued"}, "bibliographicIssueNumber": "1", "bibliographicPageStart": "9302", "bibliographicVolumeNumber": "9", "bibliographic_titles": [{}, {"bibliographic_title": "Scientific Reports", "bibliographic_titleLang": "en"}]}]}, "item_10001_creator_3": {"attribute_name": "Author", "attribute_type": "creator", "attribute_value_mlt": [{"creatorNames": [{"creatorName": "Shea, Daniel J."}], "nameIdentifiers": [{"nameIdentifier": "5688", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Nishida, Namiko"}], "nameIdentifiers": [{"nameIdentifier": "5689", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Takada, Satoko"}], "nameIdentifiers": [{"nameIdentifier": "5690", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Itabashi, Etsuko"}], "nameIdentifiers": [{"nameIdentifier": "5691", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Takahashi, Satoshi"}], "nameIdentifiers": [{"nameIdentifier": "5692", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Akter, Ayasha"}], "nameIdentifiers": [{"nameIdentifier": "5693", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Miyaji, Naomi"}], "nameIdentifiers": [{"nameIdentifier": "5694", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Osabe, Kenji"}], "nameIdentifiers": [{"nameIdentifier": "5695", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Mehraj, Hasan"}], "nameIdentifiers": [{"nameIdentifier": "5696", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Shimizu, Motoki"}], "nameIdentifiers": [{"nameIdentifier": "5697", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Seki, Motoaki"}], "nameIdentifiers": [{"nameIdentifier": "5698", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Kakizaki, Tomohiro"}], "nameIdentifiers": [{"nameIdentifier": "5699", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Okazaki, Keiichi"}], "nameIdentifiers": [{"nameIdentifier": "5700", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Dennis, Elizabeth S."}], "nameIdentifiers": [{"nameIdentifier": "5701", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Fujimoto, Ryo"}], "nameIdentifiers": [{"nameIdentifier": "5702", "nameIdentifierScheme": "WEKO"}]}]}, "item_10001_description_5": {"attribute_name": "Abstract", "attribute_value_mlt": [{"subitem_description": "Brassica rapa L. is an important agricultural crop that requires a period of prolonged cold for flowering. This process is known as vernalization. Studies have shown that long noncoding RNAs (lncRNAs) play important roles in abiotic stress responses and several cold-responsive noncoding RNAs have been suggested to be involved in vernalization. We examined the transcriptome of the Chinese cabbage inbred line (B. rapa L. var. pekinensis) RJKB-T24, and identified 1,444 long intergenic noncoding RNAs (lincRNAs), 551 natural antisense transcripts (NATs), and 93 intronic noncoding RNAs (incRNAs); 549 of the 2,088 lncRNAs significantly altered their expression in response to four weeks of cold treatment. Most differentially expressed lncRNAs did not lead to a change of expression levels in mRNAs covering or near lncRNAs, suggesting that the transcriptional responses to four weeks of cold treatment in lncRNA and mRNA are independent. However, some differentially expressed mRNAs had NATs with expression altered in the same direction. These genes were categorized as having an abiotic stress response, suggesting that the paired-expression may play a role in the transcriptional response to vernalization or cold treatment. We also identified short-term cold treatment induced NATs in BrFLC and BrMAF genes, which are involved in vernalization. The lncRNAs we identified differed from those reported in Arabidopsis thaliana, suggesting the role of lncRNAs in vernalization differ between these two species.", "subitem_description_type": "Other"}]}, "item_10001_publisher_8": {"attribute_name": "Publisher", "attribute_value_mlt": [{"subitem_publisher": "Nature Research"}]}, "item_10001_relation_13": {"attribute_name": "PubMedNo.", "attribute_value_mlt": [{"subitem_relation_type": "isIdenticalTo", "subitem_relation_type_id": {"subitem_relation_type_id_text": "info:pmid/31243302", "subitem_relation_type_select": "PMID"}}]}, "item_10001_relation_14": {"attribute_name": "DOI", "attribute_value_mlt": [{"subitem_relation_type": "isIdenticalTo", "subitem_relation_type_id": {"subitem_relation_type_id_text": "info:doi/10.1038/s41598-019-45650-w", "subitem_relation_type_select": "DOI"}}]}, "item_10001_relation_16": {"attribute_name": "情報源", "attribute_value_mlt": [{"subitem_relation_name": [{"subitem_relation_name_text": "https://creativecommons.org/licenses/by/4.0/"}]}]}, "item_10001_relation_17": {"attribute_name": "Related site", "attribute_value_mlt": [{"subitem_relation_type_id": {"subitem_relation_type_id_text": "https://www.nature.com/articles/s41598-019-45650-w", "subitem_relation_type_select": "URI"}}]}, "item_10001_rights_15": {"attribute_name": "Rights", "attribute_value_mlt": [{"subitem_rights": "© 2019 The Author(s)."}]}, "item_10001_source_id_9": {"attribute_name": "ISSN", "attribute_value_mlt": [{"subitem_source_identifier": "2045-2322", "subitem_source_identifier_type": "ISSN"}]}, "item_10001_version_type_20": {"attribute_name": "Author\u0027s flag", "attribute_value_mlt": [{"subitem_version_resource": "http://purl.org/coar/version/c_970fb48d4fbd8a85", "subitem_version_type": "VoR"}]}, "item_files": {"attribute_name": "ファイル情報", "attribute_type": "file", "attribute_value_mlt": [{"accessrole": "open_date", "date": [{"dateType": "Available", "dateValue": "2019-07-26"}], "displaytype": "detail", "download_preview_message": "", "file_order": 0, "filename": "Shea-2019-Long noncoding RNAs in Brassica rapa.pdf", "filesize": [{"value": "2.3 MB"}], "format": "application/pdf", "future_date_message": "", "is_thumbnail": false, "licensefree": "Creative Commons\nAttribution 4.0 International\n(https://creativecommons.org/licenses/by/4.0/)", "licensetype": "license_free", "mimetype": "application/pdf", "size": 2300000.0, "url": {"label": "Shea-2019-Long noncoding RNAs in Brassica rapa", "url": "https://oist.repo.nii.ac.jp/record/1031/files/Shea-2019-Long noncoding RNAs in Brassica rapa.pdf"}, "version_id": "77d61185-a56e-41e0-beb3-2308f620ee59"}]}, "item_language": {"attribute_name": "言語", "attribute_value_mlt": [{"subitem_language": "eng"}]}, "item_resource_type": {"attribute_name": "資源タイプ", "attribute_value_mlt": [{"resourcetype": "journal article", "resourceuri": "http://purl.org/coar/resource_type/c_6501"}]}, "item_title": "Long noncoding RNAs in Brassica rapa L. following vernalization", "item_titles": {"attribute_name": "タイトル", "attribute_value_mlt": [{"subitem_title": "Long noncoding RNAs in Brassica rapa L. following vernalization", "subitem_title_language": "en"}]}, "item_type_id": "10001", "owner": "28", "path": ["52"], "permalink_uri": "https://oist.repo.nii.ac.jp/records/1031", "pubdate": {"attribute_name": "公開日", "attribute_value": "2019-07-26"}, "publish_date": "2019-07-26", "publish_status": "0", "recid": "1031", "relation": {}, "relation_version_is_last": true, "title": ["Long noncoding RNAs in Brassica rapa L. following vernalization"], "weko_shared_id": 28}
Long noncoding RNAs in Brassica rapa L. following vernalization
https://oist.repo.nii.ac.jp/records/1031
https://oist.repo.nii.ac.jp/records/10312cfc7d67-b257-443d-8c07-fe26c9e8e004
名前 / ファイル | ライセンス | アクション |
---|---|---|
Shea-2019-Long noncoding RNAs in Brassica rapa (2.3 MB)
|
Creative Commons
Attribution 4.0 International (https://creativecommons.org/licenses/by/4.0/) |
Item type | 学術雑誌論文 / Journal Article(1) | |||||
---|---|---|---|---|---|---|
公開日 | 2019-07-26 | |||||
タイトル | ||||||
言語 | en | |||||
タイトル | Long noncoding RNAs in Brassica rapa L. following vernalization | |||||
言語 | ||||||
言語 | eng | |||||
資源タイプ | ||||||
資源タイプ識別子 | http://purl.org/coar/resource_type/c_6501 | |||||
資源タイプ | journal article | |||||
著者(英) |
Shea, Daniel J.
× Shea, Daniel J.× Nishida, Namiko× Takada, Satoko× Itabashi, Etsuko× Takahashi, Satoshi× Akter, Ayasha× Miyaji, Naomi× Osabe, Kenji× Mehraj, Hasan× Shimizu, Motoki× Seki, Motoaki× Kakizaki, Tomohiro× Okazaki, Keiichi× Dennis, Elizabeth S.× Fujimoto, Ryo |
|||||
書誌情報 |
en : Scientific Reports 巻 9, 号 1, p. 9302, 発行日 2019-06-26 |
|||||
抄録 | ||||||
内容記述タイプ | Other | |||||
内容記述 | Brassica rapa L. is an important agricultural crop that requires a period of prolonged cold for flowering. This process is known as vernalization. Studies have shown that long noncoding RNAs (lncRNAs) play important roles in abiotic stress responses and several cold-responsive noncoding RNAs have been suggested to be involved in vernalization. We examined the transcriptome of the Chinese cabbage inbred line (B. rapa L. var. pekinensis) RJKB-T24, and identified 1,444 long intergenic noncoding RNAs (lincRNAs), 551 natural antisense transcripts (NATs), and 93 intronic noncoding RNAs (incRNAs); 549 of the 2,088 lncRNAs significantly altered their expression in response to four weeks of cold treatment. Most differentially expressed lncRNAs did not lead to a change of expression levels in mRNAs covering or near lncRNAs, suggesting that the transcriptional responses to four weeks of cold treatment in lncRNA and mRNA are independent. However, some differentially expressed mRNAs had NATs with expression altered in the same direction. These genes were categorized as having an abiotic stress response, suggesting that the paired-expression may play a role in the transcriptional response to vernalization or cold treatment. We also identified short-term cold treatment induced NATs in BrFLC and BrMAF genes, which are involved in vernalization. The lncRNAs we identified differed from those reported in Arabidopsis thaliana, suggesting the role of lncRNAs in vernalization differ between these two species. | |||||
出版者 | ||||||
出版者 | Nature Research | |||||
ISSN | ||||||
収録物識別子タイプ | ISSN | |||||
収録物識別子 | 2045-2322 | |||||
PubMed番号 | ||||||
関連タイプ | isIdenticalTo | |||||
識別子タイプ | PMID | |||||
関連識別子 | info:pmid/31243302 | |||||
DOI | ||||||
関連タイプ | isIdenticalTo | |||||
識別子タイプ | DOI | |||||
関連識別子 | info:doi/10.1038/s41598-019-45650-w | |||||
権利 | ||||||
権利情報 | © 2019 The Author(s). | |||||
情報源 | ||||||
関連名称 | https://creativecommons.org/licenses/by/4.0/ | |||||
関連サイト | ||||||
識別子タイプ | URI | |||||
関連識別子 | https://www.nature.com/articles/s41598-019-45650-w | |||||
著者版フラグ | ||||||
出版タイプ | VoR | |||||
出版タイプResource | http://purl.org/coar/version/c_970fb48d4fbd8a85 |