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Genome and transcriptome assemblies of the kuruma shrimp, Marsupenaeus japonicus
https://oist.repo.nii.ac.jp/records/2520
https://oist.repo.nii.ac.jp/records/2520eb4c2b93-3a51-4e56-aced-6e4ce01c127f
名前 / ファイル | ライセンス | アクション |
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jkab268 (748.1 kB)
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Item type | 学術雑誌論文 / Journal Article(1) | |||||
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公開日 | 2022-01-14 | |||||
タイトル | ||||||
言語 | en | |||||
タイトル | Genome and transcriptome assemblies of the kuruma shrimp, Marsupenaeus japonicus | |||||
言語 | ||||||
言語 | eng | |||||
キーワード | ||||||
言語 | en | |||||
主題Scheme | Other | |||||
主題 | penaeidae|penaeid shrimp|kuruma prawn|Penaeus japonicus|Marsupenaeus japonicus|genome sequencing|genome annotation|transcriptome assembly | |||||
資源タイプ | ||||||
資源タイプ識別子 | http://purl.org/coar/resource_type/c_6501 | |||||
資源タイプ | journal article | |||||
アクセス権 | ||||||
アクセス権 | open access | |||||
アクセス権URI | http://purl.org/coar/access_right/c_abf2 | |||||
著者(英) |
Kawato, Satoshi
× Kawato, Satoshi× Nishitsuji, Koki× Arimoto, Asuka× Hisata, Kanako× Kawamitsu, Mayumi× Nozaki, Reiko× Kondo, Hidehiro× Shinzato, Chuya× Ohira, Tsuyoshi× Satoh, Noriyuki× Shoguchi, Eiichi× Hirono, Ikuo |
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書誌情報 |
en : G3 Genes|Genomes|Genetics 巻 11, 号 11, p. jkab268, 発行日 2021-08-05 |
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抄録 | ||||||
内容記述タイプ | Abstract | |||||
内容記述 | The kuruma shrimp Marsupenaeus japonicus (order Decapoda, family Penaeidae) is an economically important crustacean that occurs in shallow, warm seas across the Indo-Pacific. Here, using a combination of Illumina and Oxford Nanopore Technologies platforms, we produced a draft genome assembly of M. japonicus (1.70 Gbp; 18,210 scaffolds; scaffold N50 = 234.9 kbp; 34.38% GC, 93.4% BUSCO completeness) and a complete mitochondrial genome sequence (15,969 bp). As with other penaeid shrimp genomes, the M. japonicus genome is extremely rich in simple repeats, which occupies 27.4% of the assembly. A total of 26,381 protein-coding gene models (94.7% BUSCO completeness) were predicted, of which 18,005 genes (68.2%) were assigned functional description by at least one method. We also produced an Illumina-based transcriptome shotgun assembly (40,991 entries; 93.0% BUSCO completeness) and a PacBio Iso-Seq transcriptome assembly (25,415 entries; 67.5% BUSCO completeness). We envision that the M. japonicus genome and transcriptome assemblies will serve as useful resources for the basic research, fisheries management, and breeding programs of M. japonicus. | |||||
言語 | en | |||||
出版者 | ||||||
出版者 | Oxford University Press on behalf of Genetics Society of America. | |||||
ISSN | ||||||
収録物識別子タイプ | EISSN | |||||
収録物識別子 | 2160-1836 | |||||
PubMed番号 | ||||||
関連タイプ | isIdenticalTo | |||||
識別子タイプ | PMID | |||||
関連識別子 | 34515781 | |||||
DOI | ||||||
関連タイプ | isIdenticalTo | |||||
識別子タイプ | DOI | |||||
関連識別子 | info:doi/10.1093/g3journal/jkab268 | |||||
権利 | ||||||
権利情報 | © 2021 The Author(s). | |||||
関連サイト | ||||||
識別子タイプ | URI | |||||
関連識別子 | https://academic.oup.com/g3journal/article/11/11/jkab268/6342415 | |||||
著者版フラグ | ||||||
出版タイプ | VoR | |||||
出版タイプResource | http://purl.org/coar/version/c_970fb48d4fbd8a85 |