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Using ultraconserved elements to reconstruct the termite tree of life
https://oist.repo.nii.ac.jp/records/2681
https://oist.repo.nii.ac.jp/records/2681696cbb25-591a-4534-a22b-3395fcdea555
名前 / ファイル | ライセンス | アクション |
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OISTIR_UCEs in termites_220302-SUB-REVISED-220 (480.0 kB)
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CC BY-NC-ND 4.0
Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International(https://creativecommons.org/licenses/by-nc-nd/4.0/) |
Item type | 学術雑誌論文 / Journal Article(1) | |||||
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公開日 | 2022-07-05 | |||||
タイトル | ||||||
言語 | en | |||||
タイトル | Using ultraconserved elements to reconstruct the termite tree of life | |||||
言語 | ||||||
言語 | eng | |||||
キーワード | ||||||
主題Scheme | Other | |||||
主題 | Data Mining | |||||
キーワード | ||||||
主題Scheme | Other | |||||
主題 | Isoptera | |||||
キーワード | ||||||
主題Scheme | Other | |||||
主題 | Phylogenomics | |||||
キーワード | ||||||
主題Scheme | Other | |||||
主題 | Mitochondrial genome | |||||
キーワード | ||||||
主題Scheme | Other | |||||
主題 | Nuclear genome | |||||
キーワード | ||||||
主題Scheme | Other | |||||
主題 | Taxonomy | |||||
資源タイプ | ||||||
資源タイプ識別子 | http://purl.org/coar/resource_type/c_6501 | |||||
資源タイプ | journal article | |||||
著者(英) |
Hellemans, Simon
× Hellemans, Simon× Wang, Menglin× Hasegawa, Nonno× Šobotník, Jan× Scheffrahn, Rudolf H.× Bourguignon, Thomas |
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書誌情報 |
en : Molecular Phylogenetics and Evolution 巻 173, p. 107520, 発行日 2022-05-25 |
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抄録 | ||||||
内容記述タイプ | Other | |||||
内容記述 | The phylogenetic history of termites has been investigated using mitochondrial genomes and transcriptomes. However, both sets of markers have specific limitations. Mitochondrial genomes represent a single genetic marker likely to yield phylogenetic trees presenting incongruences with species trees, and transcriptomes can only be obtained from well-preserved samples. In contrast, ultraconserved elements (UCEs) include a great many independent markers that can be retrieved from poorly preserved samples. Here, we designed termite-specific baits targeting 50,616 UCE loci. We tested our UCE bait set on 42 samples of termites and three samples of Cryptocercus, for which we generated low-coverage highly-fragmented genome assemblies and successfully extracted in silico between 3,426 to 42,860 non-duplicated UCEs per sample. Our maximum likelihood phylogenetic tree, reconstructed using the 5,934 UCE loci retrieved from upward of 75% of samples, was congruent with transcriptome-based phylogenies, demonstrating that our UCE bait set is reliable and phylogenetically informative. Combined with non-destructive DNA extraction protocols, our UCE bait set provides the tool needed to carry out a global taxonomic revision of termites based on poorly preserved specimens such as old museum samples. The Termite UCE database is maintained at: https://github.com/oist/TER-UCE-DB/. | |||||
出版者 | ||||||
出版者 | Elsevier Inc. | |||||
ISSN | ||||||
収録物識別子タイプ | ISSN | |||||
収録物識別子 | 1055-7903 | |||||
PubMed番号 | ||||||
関連タイプ | isVersionOf | |||||
識別子タイプ | PMID | |||||
関連識別子 | info:pmid/35577300 | |||||
DOI | ||||||
関連タイプ | isVersionOf | |||||
識別子タイプ | DOI | |||||
関連識別子 | info:doi/10.1016/j.ympev.2022.107520 | |||||
権利 | ||||||
権利情報 | © 2022 Elsevier Inc. All rights reserved. | |||||
関連サイト | ||||||
識別子タイプ | URI | |||||
関連識別子 | https://www.sciencedirect.com/science/article/pii/S1055790322001336 | |||||
著者版フラグ | ||||||
出版タイプ | AM | |||||
出版タイプResource | http://purl.org/coar/version/c_ab4af688f83e57aa |