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Toward global integration of biodiversity big data: a harmonized metabarcode data generation module for terrestrial arthropods
https://oist.repo.nii.ac.jp/records/2784
https://oist.repo.nii.ac.jp/records/278481f01f57-36d5-4cd6-9b0c-1b404ebb5191
名前 / ファイル | ライセンス | アクション |
---|---|---|
giac065 (454.9 kB)
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CC BY 4.0
Creative Commons Attribution 4.0 International (https://creativecommons.org/licenses/by/4.0/) |
Item type | 学術雑誌論文 / Journal Article(1) | |||||
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公開日 | 2022-09-16 | |||||
タイトル | ||||||
言語 | en | |||||
タイトル | Toward global integration of biodiversity big data: a harmonized metabarcode data generation module for terrestrial arthropods | |||||
言語 | ||||||
言語 | eng | |||||
キーワード | ||||||
主題Scheme | Other | |||||
主題 | metabarcoding | |||||
キーワード | ||||||
主題Scheme | Other | |||||
主題 | arthropods | |||||
キーワード | ||||||
主題Scheme | Other | |||||
主題 | harmonization | |||||
キーワード | ||||||
主題Scheme | Other | |||||
主題 | data generation | |||||
キーワード | ||||||
主題Scheme | Other | |||||
主題 | modular structure | |||||
キーワード | ||||||
主題Scheme | Other | |||||
主題 | biodiversity inventory | |||||
キーワード | ||||||
主題Scheme | Other | |||||
主題 | biodiversity big data integration | |||||
キーワード | ||||||
主題Scheme | Other | |||||
主題 | reproducibility | |||||
キーワード | ||||||
主題Scheme | Other | |||||
主題 | comparability | |||||
資源タイプ | ||||||
資源タイプ識別子 | http://purl.org/coar/resource_type/c_6501 | |||||
資源タイプ | journal article | |||||
著者(英) |
Arribas, Paula
× Arribas, Paula× Andújar, Carmelo× Bohmann, Kristine× deWaard, Jeremy R× Economo, Evan P× Elbrecht, Vasco× Geisen, Stefan× Goberna, Marta× Krehenwinkel, Henrik× Novotny, Vojtech× Zinger, Lucie× Creedy, Thomas J× Meramveliotakis, Emmanouil× Noguerales, Víctor× Overcast, Isaac× Morlon, Hélène× Papadopoulou, Anna× Vogler, Alfried P× Emerson, Brent C |
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書誌情報 |
en : GigaScience 巻 11, p. giac065, 発行日 2022-07-19 |
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抄録 | ||||||
内容記述タイプ | Other | |||||
内容記述 | Metazoan metabarcoding is emerging as an essential strategy for inventorying biodiversity, with diverse projects currently generating massive quantities of community-level data. The potential for integrating across such data sets offers new opportunities to better understand biodiversity and how it might respond to global change. However, large-scale syntheses may be compromised if metabarcoding workflows differ from each other. There are ongoing efforts to improve standardization for the reporting of inventory data. However, harmonization at the stage of generating metabarcode data has yet to be addressed. A modular framework for harmonized data generation offers a pathway to navigate the complex structure of terrestrial metazoan biodiversity. Here, through our collective expertise as practitioners, method developers, and researchers leading metabarcoding initiatives to inventory terrestrial biodiversity, we seek to initiate a harmonized framework for metabarcode data generation, with a terrestrial arthropod module. We develop an initial set of submodules covering the 5 main steps of metabarcode data generation: (i) sample acquisition; (ii) sample processing; (iii) DNA extraction; (iv) polymerase chain reaction amplification, library preparation, and sequencing; and (v) DNA sequence and metadata deposition, providing a backbone for a terrestrial arthropod module. To achieve this, we (i) identified key points for harmonization, (ii) reviewed the current state of the art, and (iii) distilled existing knowledge within submodules, thus promoting best practice by providing guidelines and recommendations to reduce the universe of methodological options. We advocate the adoption and further development of the terrestrial arthropod module. We further encourage the development of modules for other biodiversity fractions as an essential step toward large-scale biodiversity synthesis through harmonization. | |||||
出版者 | ||||||
出版者 | Oxford University Press GigaScience | |||||
ISSN | ||||||
収録物識別子タイプ | ISSN | |||||
収録物識別子 | 2047-217X | |||||
PubMed番号 | ||||||
関連タイプ | isIdenticalTo | |||||
識別子タイプ | PMID | |||||
関連識別子 | info:pmid/35852418 | |||||
DOI | ||||||
関連タイプ | isIdenticalTo | |||||
識別子タイプ | DOI | |||||
関連識別子 | info:doi/10.1093/gigascience/giac065 | |||||
権利 | ||||||
権利情報 | © 2022 The Author(s) | |||||
関連サイト | ||||||
識別子タイプ | URI | |||||
関連識別子 | https://academic.oup.com/gigascience/article/doi/10.1093/gigascience/giac065/6646445 | |||||
著者版フラグ | ||||||
出版タイプ | VoR | |||||
出版タイプResource | http://purl.org/coar/version/c_970fb48d4fbd8a85 |