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Design and implementation of multi-signal and time-varying neural reconstructions
https://oist.repo.nii.ac.jp/records/656
https://oist.repo.nii.ac.jp/records/65641261838-f5e3-461f-b09f-f0d2cdca07bd
名前 / ファイル | ライセンス | アクション |
---|---|---|
sdata2017207 (2.6 MB)
|
Creative Commons Attribution 4.0 International
(http://creativecommons.org/licenses/by/4.0/) |
Item type | 学術雑誌論文 / Journal Article(1) | |||||
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公開日 | 2018-08-14 | |||||
タイトル | ||||||
言語 | en | |||||
タイトル | Design and implementation of multi-signal and time-varying neural reconstructions | |||||
言語 | ||||||
言語 | eng | |||||
資源タイプ | ||||||
資源タイプ識別子 | http://purl.org/coar/resource_type/c_6501 | |||||
資源タイプ | journal article | |||||
著者(英) |
Nanda, Sumit
× Nanda, Sumit× Chen, Hanbo× Das, Ravi× Bhattacharjee, Shatabdi× Cuntz, Hermann× Torben-Nielsen, Benjamin× Peng, Hanchuan× Cox, Daniel N.× De Schutter, Erik× Ascoli, Giorgio A. |
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書誌情報 |
en : Scientific Data 巻 5, p. 170207, 発行日 2018-01-23 |
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抄録 | ||||||
内容記述タイプ | Other | |||||
内容記述 | Several efficient procedures exist to digitally trace neuronal structure from light microscopy, and mature community resources have emerged to store, share, and analyze these datasets. In contrast, the quantification of intracellular distributions and morphological dynamics is not yet standardized. Current widespread descriptions of neuron morphology are static and inadequate for subcellular characterizations. We introduce a new file format to represent multichannel information as well as an open-source Vaa3D plugin to acquire this type of data. Next we define a novel data structure to capture morphological dynamics, and demonstrate its application to different time-lapse experiments. Importantly, we designed both innovations as judicious extensions of the classic SWC format, thus ensuring full back-compatibility with popular visualization and modeling tools. We then deploy the combined multichannel/time-varying reconstruction system on developing neurons in live Drosophila larvae by digitally tracing fluorescently labeled cytoskeletal components along with overall dendritic morphology as they changed over time. This same design is also suitable for quantifying dendritic calcium dynamics and tracking arbor-wide movement of any subcellular substrate of interest. | |||||
出版者 | ||||||
出版者 | Springer Nature | |||||
ISSN | ||||||
収録物識別子タイプ | ISSN | |||||
収録物識別子 | 2052-4463 | |||||
PubMed番号 | ||||||
関連タイプ | isVersionOf | |||||
識別子タイプ | PMID | |||||
関連識別子 | info:pmid/29360104 | |||||
DOI | ||||||
関連タイプ | isVersionOf | |||||
識別子タイプ | DOI | |||||
関連識別子 | info:doi/10.1038/sdata.2017.207 | |||||
権利 | ||||||
権利情報 | © 2018 The Author(s). | |||||
関連サイト | ||||||
識別子タイプ | URI | |||||
関連識別子 | https://www.nature.com/articles/sdata2017207 | |||||
著者版フラグ | ||||||
出版タイプ | AM | |||||
出版タイプResource | http://purl.org/coar/version/c_ab4af688f83e57aa |