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Genus-level phylogeny of cephalopods using molecular markers: current status and problematic areas
https://oist.repo.nii.ac.jp/records/667
https://oist.repo.nii.ac.jp/records/6677e310154-c5af-4f6a-80b7-0852b873b75c
名前 / ファイル | ライセンス | アクション |
---|---|---|
peerj-4331 (549.4 kB)
|
Creative Commons Attribution 4.0 International
(http://creativecommons.org/licenses/by/4.0/) |
Item type | 学術雑誌論文 / Journal Article(1) | |||||
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公開日 | 2018-08-15 | |||||
タイトル | ||||||
言語 | en | |||||
タイトル | Genus-level phylogeny of cephalopods using molecular markers: current status and problematic areas | |||||
言語 | ||||||
言語 | eng | |||||
資源タイプ | ||||||
資源タイプ識別子 | http://purl.org/coar/resource_type/c_6501 | |||||
資源タイプ | journal article | |||||
著者(英) |
Sanchez, Gustavo
× Sanchez, Gustavo× Setiamarga, Davin H.E.× Tuanapaya, Surangkana× Tongtherm, Kittichai× Winkelmann, Inger E.× Schmidbaur, Hannah× Umino, Tetsuya× Albertin, Caroline× Allcock, Louise× Perales-Raya, Catalina× Gleadall, Ian× Strugnell, Jan M.× Simakov, Oleg× Nabhitabhata, Jaruwat |
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書誌情報 |
en : PeerJ 巻 6, p. e4331, 発行日 2018-02-12 |
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抄録 | ||||||
内容記述タイプ | Other | |||||
内容記述 | Comprising more than 800 extant species, the class Cephalopoda (octopuses, squid, cuttlefish, and nautiluses) is a fascinating group of marine conchiferan mollusks. Recently, the first cephalopod genome (of Octopus bimaculoides) was published, providing a genomic framework, which will enable more detailed investigations of cephalopod characteristics, including developmental, morphological, and behavioural traits. Meanwhile, a robust phylogeny of the members of the subclass Coleoidea (octopuses, squid, cuttlefishes) is crucial for comparative and evolutionary studies aiming to investigate the group’s traits and innovations, but such a phylogeny has proven very challenging to obtain. Here, we present the results of phylogenetic inference at the genus level using mitochondrial and nuclear marker sequences available from public databases. Topologies are presented which show support for (1) the monophyly of the two main superorders, Octobrachia and Decabrachia, and (2) some of the interrelationships at the family level. We have mapped morphological characters onto the tree and conducted molecular dating analyses, obtaining congruent results with previous estimates of divergence in major lineages. Our study also identifies unresolved phylogenetic relationships within the cephalopod phylogeny and insufficient taxonomic sampling among squids excluding the Loliginidae in the Decabrachia and within the Order Cirromorphida in the Octobrachia. Genomic and transcriptomic resources should enable resolution of these issues in the relatively near future. We provide our alignment as an open access resource, to allow other researchers to reconstruct phylogenetic trees upon this work in the future. | |||||
出版者 | ||||||
出版者 | PeerJ, Inc. | |||||
ISSN | ||||||
収録物識別子タイプ | ISSN | |||||
収録物識別子 | 2167-8359 | |||||
PubMed番号 | ||||||
関連タイプ | isIdenticalTo | |||||
識別子タイプ | PMID | |||||
関連識別子 | info:pmid/29456885 | |||||
DOI | ||||||
関連タイプ | isIdenticalTo | |||||
識別子タイプ | DOI | |||||
関連識別子 | info:doi/10.7717/peerj.4331 | |||||
権利 | ||||||
権利情報 | © 2018 Sanchez et al. | |||||
関連サイト | ||||||
識別子タイプ | URI | |||||
関連識別子 | https://peerj.com/articles/4331/ | |||||
著者版フラグ | ||||||
出版タイプ | VoR | |||||
出版タイプResource | http://purl.org/coar/version/c_970fb48d4fbd8a85 |