WEKO3
アイテム
{"_buckets": {"deposit": "3367a8c0-f2a9-458c-a51b-9bc422f46b2c"}, "_deposit": {"created_by": 27, "id": "765", "owners": [27], "pid": {"revision_id": 0, "type": "depid", "value": "765"}, "status": "published"}, "_oai": {"id": "oai:oist.repo.nii.ac.jp:00000765", "sets": ["31"]}, "author_link": ["3941", "3943", "3940", "3942"], "item_10001_biblio_info_7": {"attribute_name": "Bibliographic Information", "attribute_value_mlt": [{"bibliographicIssueDates": {"bibliographicIssueDate": "2017-12-01", "bibliographicIssueDateType": "Issued"}, "bibliographicIssueNumber": "8", "bibliographicPageEnd": "1405", "bibliographicPageStart": "1404", "bibliographicVolumeNumber": "34", "bibliographic_titles": [{}, {"bibliographic_title": "Bioinformatics", "bibliographic_titleLang": "en"}]}]}, "item_10001_creator_3": {"attribute_name": "Author", "attribute_type": "creator", "attribute_value_mlt": [{"creatorNames": [{"creatorName": "Orakov, Askarbek N"}], "nameIdentifiers": [{"nameIdentifier": "3940", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Sakenova, Nazgul K"}], "nameIdentifiers": [{"nameIdentifier": "3941", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Sorokin, Anatoly"}], "nameIdentifiers": [{"nameIdentifier": "3942", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Goryanin, Igor I"}], "nameIdentifiers": [{"nameIdentifier": "3943", "nameIdentifierScheme": "WEKO"}]}]}, "item_10001_description_5": {"attribute_name": "Abstract", "attribute_value_mlt": [{"subitem_description": "Motivation: Functional and taxonomic analyses are critical steps in understanding interspecific interactions within microbial communities. Currently, such analyses are run separately, which complicates interpretation of results. Here we present the ASAR interactive tool for simultaneous analysis of metagenomic data in three dimensions: taxonomy, function, metagenome. \nResults: An interactive data analysis tool for selection, aggregation and visualization of metagenomic data is presented. Functional analysis with a SEED hierarchy and pathway diagram based on KEGG orthology based upon MG-RAST annotation results is available. \nAvailability and implementation: Source code of the ASAR is accessible at GitHub (https://github.com/Askarbek-orakov/ASAR). Contact: askarbek.orakov@nu.edu.kz or goryanin@gmail.com.", "subitem_description_type": "Other"}]}, "item_10001_publisher_8": {"attribute_name": "Publisher", "attribute_value_mlt": [{"subitem_publisher": "Oxford University Press"}]}, "item_10001_relation_13": {"attribute_name": "PubMedNo.", "attribute_value_mlt": [{"subitem_relation_type": "isIdenticalTo", "subitem_relation_type_id": {"subitem_relation_type_id_text": "info:pmid/29211828", "subitem_relation_type_select": "PMID"}}]}, "item_10001_relation_14": {"attribute_name": "DOI", "attribute_value_mlt": [{"subitem_relation_type": "isIdenticalTo", "subitem_relation_type_id": {"subitem_relation_type_id_text": "info:doi/10.1093/bioinformatics/btx775", "subitem_relation_type_select": "DOI"}}]}, "item_10001_relation_17": {"attribute_name": "Related site", "attribute_value_mlt": [{"subitem_relation_type_id": {"subitem_relation_type_id_text": "https://academic.oup.com/bioinformatics/article/34/8/1404/4683460", "subitem_relation_type_select": "URI"}}]}, "item_10001_rights_15": {"attribute_name": "Rights", "attribute_value_mlt": [{"subitem_rights": "© 2018 The Author(s)."}]}, "item_10001_source_id_9": {"attribute_name": "ISSN", "attribute_value_mlt": [{"subitem_source_identifier": "1460-2059", "subitem_source_identifier_type": "ISSN"}]}, "item_10001_version_type_20": {"attribute_name": "Author\u0027s flag", "attribute_value_mlt": [{"subitem_version_resource": "http://purl.org/coar/version/c_970fb48d4fbd8a85", "subitem_version_type": "VoR"}]}, "item_files": {"attribute_name": "ファイル情報", "attribute_type": "file", "attribute_value_mlt": [{"accessrole": "open_date", "date": [{"dateType": "Available", "dateValue": "2018-12-06"}], "displaytype": "detail", "download_preview_message": "", "file_order": 0, "filename": "Orakov-2018-ASAR_ visual analysis of metagenom.pdf", "filesize": [{"value": "889.4 kB"}], "format": "application/pdf", "future_date_message": "", "is_thumbnail": false, "licensefree": "Creative Commons \nAttribution 4.0 International\n(https://creativecommons.org/licenses/by/4.0/)", "licensetype": "license_free", "mimetype": "application/pdf", "size": 889400.0, "url": {"label": "Orakov-2018-ASAR_ visual analysis of metagenom", "url": "https://oist.repo.nii.ac.jp/record/765/files/Orakov-2018-ASAR_ visual analysis of metagenom.pdf"}, "version_id": "776cdbec-b6b8-4435-9232-09f044d8e36c"}]}, "item_language": {"attribute_name": "言語", "attribute_value_mlt": [{"subitem_language": "eng"}]}, "item_resource_type": {"attribute_name": "資源タイプ", "attribute_value_mlt": [{"resourcetype": "journal article", "resourceuri": "http://purl.org/coar/resource_type/c_6501"}]}, "item_title": "ASAR: visual analysis of metagenomes in R", "item_titles": {"attribute_name": "タイトル", "attribute_value_mlt": [{"subitem_title": "ASAR: visual analysis of metagenomes in R", "subitem_title_language": "en"}]}, "item_type_id": "10001", "owner": "27", "path": ["31"], "permalink_uri": "https://oist.repo.nii.ac.jp/records/765", "pubdate": {"attribute_name": "公開日", "attribute_value": "2018-12-06"}, "publish_date": "2018-12-06", "publish_status": "0", "recid": "765", "relation": {}, "relation_version_is_last": true, "title": ["ASAR: visual analysis of metagenomes in R"], "weko_shared_id": 27}
ASAR: visual analysis of metagenomes in R
https://oist.repo.nii.ac.jp/records/765
https://oist.repo.nii.ac.jp/records/765e219a3ac-3a09-4a06-993a-36dd2dee57c7
名前 / ファイル | ライセンス | アクション |
---|---|---|
Orakov-2018-ASAR_ visual analysis of metagenom (889.4 kB)
|
Creative Commons
Attribution 4.0 International (https://creativecommons.org/licenses/by/4.0/) |
Item type | 学術雑誌論文 / Journal Article(1) | |||||
---|---|---|---|---|---|---|
公開日 | 2018-12-06 | |||||
タイトル | ||||||
言語 | en | |||||
タイトル | ASAR: visual analysis of metagenomes in R | |||||
言語 | ||||||
言語 | eng | |||||
資源タイプ | ||||||
資源タイプ識別子 | http://purl.org/coar/resource_type/c_6501 | |||||
資源タイプ | journal article | |||||
著者(英) |
Orakov, Askarbek N
× Orakov, Askarbek N× Sakenova, Nazgul K× Sorokin, Anatoly× Goryanin, Igor I |
|||||
書誌情報 |
en : Bioinformatics 巻 34, 号 8, p. 1404-1405, 発行日 2017-12-01 |
|||||
抄録 | ||||||
内容記述タイプ | Other | |||||
内容記述 | Motivation: Functional and taxonomic analyses are critical steps in understanding interspecific interactions within microbial communities. Currently, such analyses are run separately, which complicates interpretation of results. Here we present the ASAR interactive tool for simultaneous analysis of metagenomic data in three dimensions: taxonomy, function, metagenome. Results: An interactive data analysis tool for selection, aggregation and visualization of metagenomic data is presented. Functional analysis with a SEED hierarchy and pathway diagram based on KEGG orthology based upon MG-RAST annotation results is available. Availability and implementation: Source code of the ASAR is accessible at GitHub (https://github.com/Askarbek-orakov/ASAR). Contact: askarbek.orakov@nu.edu.kz or goryanin@gmail.com. |
|||||
出版者 | ||||||
出版者 | Oxford University Press | |||||
ISSN | ||||||
収録物識別子タイプ | ISSN | |||||
収録物識別子 | 1460-2059 | |||||
PubMed番号 | ||||||
関連タイプ | isIdenticalTo | |||||
識別子タイプ | PMID | |||||
関連識別子 | info:pmid/29211828 | |||||
DOI | ||||||
関連タイプ | isIdenticalTo | |||||
識別子タイプ | DOI | |||||
関連識別子 | info:doi/10.1093/bioinformatics/btx775 | |||||
権利 | ||||||
権利情報 | © 2018 The Author(s). | |||||
関連サイト | ||||||
識別子タイプ | URI | |||||
関連識別子 | https://academic.oup.com/bioinformatics/article/34/8/1404/4683460 | |||||
著者版フラグ | ||||||
出版タイプ | VoR | |||||
出版タイプResource | http://purl.org/coar/version/c_970fb48d4fbd8a85 |