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The crown-of-thorns starfish genome as a guide for biocontrol of this coral reef pest

Michael R. Hall , Kevin M. Kocot , Kenneth W. Baughman , Selene L. Fernandez-Valverde , Marie E. A. Gauthier , William L. Hatleberg , Arunkumar Krishnan , Carmel McDougall , Cherie A. Motti , Eiichi Shoguchi , Tianfang Wang , Xueyan Xiang , Min Zhao , Utpal Bose , Chuya Shinzato , Kanako Hisata , Manabu Fujie , Miyuki Kanda , Scott F. Cummins , Noriyuki Satoh , Sandie M. Degnan , Bernard M. Degnan
Nature,544,231-234 (2017-04-05) , Springer Nature , info:doi/10.1038/nature22033 , publisher

Fluorescence from a single Symbiodinium cell

Christine Guzman , Xue Han , Eiichi Shoguchi , Síle Nic Chormaic
Methods and Applications in Fluorescence,6(3),035003 (2018-04-12) , IOP Publishing Ltd , info:doi/10.1088/2050-6120/aaba89 , © 2018 IOP Publishing Ltd , publisher

Two divergent Symbiodinium genomes reveal conservation of a gene cluster for sunscreen biosynthesis and recently lost genes

Eiichi Shoguchi , Girish Beedessee , Ipputa Tada , Kanako Hisata , Takeshi Kawashima , Takeshi Takeuchi , Nana Arakaki , Manabu Fujie , Ryo Koyanagi , Michael C. Roy , Masanobu Kawachi , Michio Hidaka , Noriyuki Satoh , Chuya Shinzato
BMC Genomics,19(1),458 (2018-06-14) , info:doi/10.1186/s12864-018-4857-9 , © 2018 The Author(s). , publisher

The habu genome reveals accelerated evolution of venom protein genes

Hiroki Shibata , Takahito Chijiwa , Naoko Oda-Ueda , Hitomi Nakamura , Kazuaki Yamaguchi , Shousaku Hattori , Kazumi Matsubara , Yoichi Matsuda , Akifumi Yamashita , Akiko Isomoto , Kazuki Mori , Kosuke Tashiro , Satoru Kuhara , Shinichi Yamasaki , Manabu Fujie , Hiroki Goto , Ryo Koyanagi , Takeshi Takeuchi , Yasuyuki Fukumaki , Motonori Ohno , Eiichi Shoguchi , Kanako Hisata , Noriyuki Satoh , Tomohisa Ogawa
Scientific Reports,8(1),11300 (2018-07-26) , Nature Research , info:doi/10.1038/s41598-018-28749-4 , © 2018 The Author(s). , publisher

A draft genome of the striped catfish, Pangasianodon hypophthalmus, for comparative analysis of genes relevant to development and a resource for aquaculture improvement

Oanh T. P. Kim , Phuong T. Nguyen , Eiichi Shoguchi , Kanako Hisata , Thuy T. B. Vo , Jun Inoue , Chuya Shinzato , Binh T. N. Le , Koki Nishitsuji , Miyuki Kanda , Vu H. Nguyen , Hai V. Nong , Noriyuki Satoh
BMC Genomics,19(1),733 (2018-10-05) , BMC , info:doi/10.1186/s12864-018-5079-x , © 2018 The Author(s). , publisher

Diversified secondary metabolite biosynthesis gene repertoire revealed in symbiotic dinoflagellates

Girish Beedessee , Kanako Hisata , Michael C. Roy , Frances M. Van Dolah , Noriyuki Satoh , Eiichi Shoguchi
Scientific Reports,9(1),1204 (2019-02-04) , Nature Research , info:doi/10.1038/s41598-018-37792-0 , © 2019 The Author(s). , publisher

Draft genome of the brown alga, Nemacystus decipiens, Onna-1 strain: Fusion of genes involved in the sulfated fucan biosynthesis pathway

Koki Nishitsuji , Asuka Arimoto , Yoshimi Higa , Munekazu Mekaru , Mayumi Kawamitsu , Noriyuki Satoh , Eiichi Shoguchi
Scientific Reports,9(1),4607 (2019-03-14) , Nature Research , info:doi/10.1038/s41598-019-40955-2 , © 2019 The Author(s). , publisher

A draft nuclear-genome assembly of the acoel flatworm Praesagittifera naikaiensis

Asuka Arimoto , Tomoe Hikosaka-Katayama , Akira Hikosaka , Kuni Tagawa , Toyoshige Inoue , Tatsuya Ueki , Masa-aki Yoshida , Miyuki Kanda , Eiichi Shoguchi , Kanako Hisata , Noriyuki Satoh
GigaScience,8(4),giz023 (2019-04-06) , Oxford University Press , info:doi/10.1093/gigascience/giz023 , © 2019 The Author(s). , publisher

Differential gene expression in fronds and stolons of the siphonous macroalga, Caulerpa lentillifera

Asuka Arimoto , Koki Nishitsuji , Haruhi Narisoko , Eiichi Shoguchi , Noriyuki Satoh
Development, Growth & Differentiation,61(9),475-484 (2019-11-11) , John Wiley and Sons , info:doi/10.1111/dgd.12634 , © 2019 Japanese Society of Developmental Biologists , This is the peer reviewed version of the following article: Arimoto, A, Nishitsuji, K, Narisoko, H, Shoguchi, E, Satoh, N. Differential gene expression in fronds and stolons of the siphonous macroalga, Caulerpa lentillifera. Develop Growth Differ. 2019; 61: 475– 484., which has been published in final form at https://doi.org/10.1111/dgd.12634. This article may be used for non-commercial purposes in accordance with Wiley Terms and Conditions for Use of Self-Archived Versions. , author

Organelle inheritance and genome architecture variation in isogamous brown algae

Ji Won Choi , Louis Graf , Akira F. Peters , J. Mark Cock , Koki Nishitsuji , Asuka Arimoto , Eiichi Shoguchi , Chikako Nagasato , Chang Geun Choi , Hwan Su Yoon
Scientific Reports,10(1),2048 (2020-02-06) , Nature Research , info:doi/10.1038/s41598-020-58817-7 , © 2020 The Author(s) , publisher

Correlation between Organelle Genetic Variation and RNA Editing in Dinoflagellates Associated with the Coral Acropora digitifera

Eiichi Shoguchi , Yuki Yoshioka , Chuya Shinzato , Asuka Arimoto , Debashish Bhattacharya , Noriyuki Satoh
Genome Biology and Evolution,12(3),203-209 (2020-02-27) , Oxford University Press on behalf of the Society for Molecular Biology and Evolution. , info:doi/10.1093/gbe/evaa042 , © 2020 The Author(s). , publisher

Comparative genomics of four strains of the edible brown alga, Cladosiphon okamuranus

Koki Nishitsuji , Asuka Arimoto , Yoshitaka Yonashiro , Kanako Hisata , Manabu Fujie , Mayumi Kawamitsu , Eiichi Shoguchi , Noriyuki Satoh
BMC Genomics,21(1),422 (2020-06-26) , BioMed Central Ltd , info:doi/10.1186/s12864-020-06792-8 , © 2020 The Author(s) , publisher

A New Dinoflagellate Genome Illuminates a Conserved Gene Cluster Involved in Sunscreen Biosynthesis

Eiichi Shoguchi , Girish Beedessee , Kanako Hisata , Ipputa Tada , Haruhi Narisoko , Noriyuki Satoh , Masanobu Kawachi , Chuya Shinzato
Genome Biology and Evolution,13(2), (2020-11-04) , Oxford University Press on behalf of the Society for Molecular Biology and Evolution , info:doi/10.1093/gbe/evaa235 , © 2020 The Author(s). , publisher

Response of Coral Reef Dinoflagellates to Nanoplastics under Experimental Conditions Suggests Downregulation of Cellular Metabolism

Christina Ripken , Konstantin Khalturin , Eiichi Shoguchi
Microorganisms,8(11),1759 (2020-11-09) , MDPI , info:doi/10.3390/microorganisms8111759 , © 2020 The Author(s). , publisher

Whole-Genome Transcriptome Analyses of Native Symbionts Reveal Host Coral Genomic Novelties for Establishing Coral–Algae Symbioses

Yuki Yoshioka , Hiroshi Yamashita , Go Suzuki , Yuna Zayasu , Ipputa Tada , Miyuki Kanda , Noriyuki Satoh , Eiichi Shoguchi , Chuya Shinzato
Genome Biology and Evolution,13(1), (2020-11-13) , Oxford University Press on behalf of the Society for Molecular Biology and Evolution , info:doi/10.1093/gbe/evaa240 , © 2020 The Author(s). , publisher

Expansion and Diversification of Fluorescent Protein Genes in Fifteen Acropora Species during the Evolution of Acroporid Corals

Rio Kashimoto , Kanako Hisata , Chuya Shinzato , Noriyuki Satoh , Eiichi Shoguchi
Genes,12(3),397 (2021-03-11) , MDPI , info:doi/10.3390/genes12030397 , © 2021 The Author(s). , publisher

Establishing Sustainable Cell Lines of a Coral, Acropora tenuis

Kaz Kawamura , Koki Nishitsuji , Eiichi Shoguchi , Shigeki Fujiwara , Noriyuki Satoh
Marine Biotechnology, (2021-04-26) , Springer Nature , info:doi/10.1007/s10126-021-10031-w , © 2021 The Author(s). , publisher

In vitro Symbiosis of Reef-Building Coral Cells With Photosynthetic Dinoflagellates

Kaz Kawamura , Satoko Sekida , Koki Nishitsuji , Eiichi Shoguchi , Kanako Hisata , Shigeki Fujiwara , Noriyuki Satoh
Frontiers in Marine Science,8(706308), (2021-07-14) , Frontiers Media , info:doi/10.3389/fmars.2021.706308 , © 2021 Kawamura, Sekida, Nishitsuji, Shoguchi, Hisata, Fujiwara and Satoh. , publisher

Genome and transcriptome assemblies of the kuruma shrimp, Marsupenaeus japonicus

Satoshi Kawato , Koki Nishitsuji , Asuka Arimoto , Kanako Hisata , Mayumi Kawamitsu , Reiko Nozaki , Hidehiro Kondo , Chuya Shinzato , Tsuyoshi Ohira , Noriyuki Satoh , Eiichi Shoguchi , Ikuo Hirono
G3 Genes|Genomes|Genetics,11(11),jkab268 (2021-08-05) , Oxford University Press on behalf of Genetics Society of America. , info:doi/10.1093/g3journal/jkab268 , © 2021 The Author(s). , publisher

Gene clusters for biosynthesis of mycosporine‐like amino acids in dinoflagellate nuclear genomes: Possible recent horizontal gene transfer between species of Symbiodiniaceae (Dinophyceae)

Eiichi Shoguchi
Journal of Phycology, (2021-11-26) , Wiley Periodicals LLC on behalf of Phycological Society of America , info:doi/10.1111/jpy.13219 , © 2021 The Author(s). , publisher

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