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Generic Properties of Stochastic Entropy Production
Simone Pigolotti
,
Izaak Neri
,
Édgar Roldán
,
Frank Jülicher
Physical Review Letters,119(14),140604 (2017-10-04) , American Physical Society , info:doi/10.1103/PhysRevLett.119.140604 , © 2017 American Physical Society , publisher
pdf
Stochastic Spatial Models in Ecology: A Statistical Physics Approach
Simone Pigolotti
,
Massimo Cencini
,
Daniel Molina
,
Miguel A. Muñoz
Journal of Statistical Physics,172(1),44-73 (2017-11-21) , Springer US , info:doi/10.1007/s10955-017-1926-4 , © 2017 Springer Science+Business Media, LLC, part of Springer Nature , This is a post-peer-review, pre-copyedit version of an article published in Journal of Statistical Physics. The final authenticated version is available online at: http://dx.doi.org/10.1007/s10955-017-1926-4 , author
pdf
Energetic funnel facilitates facilitated diffusion
Massimo Cencini
,
Simone Pigolotti
Nucleic Acids Research,46(2),558-567 (2017-12-04) , Oxford University Press , info:doi/10.1093/nar/gkx1220 , ©2017 Authors , publisher
pdf
Mapping of uncertainty relations between continuous and discrete time
Davide Chiuchiù
,
Simone Pigolotti
Physical Review E,97(3),032109 (2018-03-13) , American Physical Society , info:doi/10.1103/PhysRevE.97.032109 , ©2018 American Physical Society , publisher
pdf
Evolution of Complex Asexual Reproductive Strategies in Jellyfish
Nicolas Azaña Schnedler-Meyer
,
Simone Pigolotti
,
Patrizio Mariani
The American Naturalist,192(1),72-80 (2018-04-30) , The University of Chicago , info:doi/10.1086/697538 , © 2018 The University of Chicago , publisher
pdf
Arcsine Laws in Stochastic Thermodynamics
Andre C. Barato
,
Édgar Roldán
,
Ignacio A. Martínez
,
Simone Pigolotti
Physical Review Letters,121(9),090601 (2018-08-28) , American Physical Society , info:doi/10.1103/PhysRevLett.121.090601 , © 2018 American Physical Society , publisher
pdf
Bet-hedging strategies in expanding populations
Paula Villa Martín
,
Miguel A. Muñoz
,
Simone Pigolotti
PLOS Computational Biology,15(4),e1006529 (2019-04-18) , Public Library of Science , info:doi/10.1371/journal.pcbi.1006529 , © 2019 Villa Martín et al. , publisher
pdf
Error-Speed Correlations in Biopolymer Synthesis
Davide Chiuchiú
,
Yuhai Tu
,
Simone Pigolotti
Physical Review Letters,123(3),038101 (2019-07-19) , American Physical Society , info:doi/10.1103/PhysRevLett.123.038101 , © 2019 American Physical Society , publisher
pdf
Integral fluctuation relations for entropy production at stopping times
Izaak Neri
,
Édgar Roldán
,
Simone Pigolotti
,
Frank Jülicher
Journal of Statistical Mechanics: Theory and Experiment,2019(10),104006 (2019-10-16) , IOP Publishing , info:doi/10.1088/1742-5468/ab40a0 , © 2019 IOP Publishing Ltd and SISSA Medialab srl , This is the Accepted Manuscript version of an article accepted for publication in Journal of Statistical Mechanics: Theory and Experiment. IOP Publishing Ltd is not responsible for any errors or omissions in this version of the manuscript or any version derived from it. The Version of Record is available online at https://doi.org/10.1088/1742-5468/ab40a0. , author
pdf
Assembly of heteropolymers via a network of reaction coordinates
Davide Chiuchiù
,
James Ferrare
,
Simone Pigolotti
Physical Review E,100(6),062502 (2019-12-13) , American Physical Society , info:doi/10.1103/PhysRevE.100.062502 , ©2019 American Physical Society , publisher
pdf
Hyperaccurate currents in stochastic thermodynamics
Daniel Maria Busiello
,
Simone Pigolotti
Physical Review E,100(6),060102(R) (2019-12-16) , American Physical Society , info:doi/10.1103/PhysRevE.100.060102 , © 2019 American Physical Society , publisher
pdf
Stochastic thermodynamics: experiment and theory
John Bechhoefer
,
Sergio Ciliberto
,
Simone Pigolotti
,
Edgar Roldán
Journal of Statistical Mechanics: Theory and Experiment,2020(6),064001 (2020-06-02) , IOP Publishing , info:doi/10.1088/1742-5468/ab7f35 , © 2020 IOP Publishing Ltd and SISSA Medialab srl , This is the Accepted Manuscript version of an article accepted for publication in Journal of Statistical Mechanics: Theory and Experiment. IOP Publishing Ltd is not responsible for any errors or omissions in this version of the manuscript or any version derived from it. The Version of Record is available online at https://doi.org/10.1088/1742-5468/ab7f35. , author
pdf
Ocean currents promote rare species diversity in protists
Paula Villa Martín
,
Aleš Buček
,
Thomas Bourguignon
,
Simone Pigolotti
Science Advances,6(29),eaaz9037 (2020-07-15) , American Association for the Advancement of Science , info:doi/10.1126/sciadv.aaz9037 , © 2020 The Author(s). , publisher
pdf
Increased Mutation Rate Is Linked to Genome Reduction in Prokaryotes
Thomas Bourguignon
,
Yukihiro Kinjo
,
Paula Villa-Martín
,
Nicholas V. Coleman
,
Qian Tang
,
Daej A. Arab
,
Zongqing Wang
,
Gaku Tokuda
,
Yuichi Hongoh
,
Moriya Ohkuma
,
Simon Y.W. Ho
,
Simone Pigolotti
,
Nathan Lo
Current Biology,30(19),3848-3855.e4 (2020-08-06) , Elsevier , info:doi/10.1016/j.cub.2020.07.034 , This article/chapter was published Current Biology, Volume 30, Issue 19, Thomas Bourguignon, Yukihiro Kinjo, Paula Villa-Martín, Nicholas V. Coleman, Qian Tang, Daej A. Arab, Zongqing Wang, Gaku Tokuda, Yuichi Hongoh, Moriya Ohkuma, Simon Y.W. Ho, Simone Pigolotti, Nathan Lo, Increased Mutation Rate Is Linked to Genome Reduction in Prokaryotes, Pages 3848-3855.e4, © 2020 Elsevier Inc. , author
pdf
Bifractal nature of chromosome contact maps
Simone Pigolotti
,
Mogens H. Jensen
,
Yinxiu Zhan
,
Guido Tiana
Physical Review Research,2(4),043078 (2020-10-15) , American Physical Society , info:doi/10.1103/PhysRevResearch.2.043078 , © 2020 American Physical Society , publisher
pdf
Enhanced mutation rate, relaxed selection, and the ‘domino effect’ drive gene loss in Blattabacterium, a cockroach endosymbiont
Yukihiro Kinjo
,
Nathan Lo
,
Paula Villa Martín
,
Gaku Tokuda
,
Simone Pigolotti
,
Thomas Bourguignon
Molecular Biology and Evolution, (2021-05-26) , Oxford University Press on behalf of the Society for Molecular Biology and Evolution. , info:doi/10.1093/molbev/msab159 , © 2021 The Author(s). , publisher
pdf
Enhanced Mutation Rate, Relaxed Selection, and the “Domino Effect” are associated with Gene Loss in Blattabacterium, A Cockroach Endosymbiont
Yukihiro Kinjo
,
Nathan Lo
,
Paula Villa Martín
,
Gaku Tokuda
,
Simone Pigolotti
,
Thomas Bourguignon
Molecular Biology and Evolution,38(9),3820-3831 (2021-05-26) , Oxford University Press on behalf of the Society for Molecular Biology and Evolution. , info:doi/10.1093/molbev/msab159 , © 2021 The Author(s). , publisher
pdf
Physical bioenergetics: Energy fluxes, budgets, and constraints in cells
Xingbo Yang
,
Matthias Heinemann
,
Jonathon Howard
,
Greg Huber
,
Srividya Iyer-Biswas
,
Guillaume Le Treut
,
Michael Lynch
,
Kristi L. Montooth
,
Daniel J. Needleman
,
Simone Pigolotti
,
Jonathan Rodenfels
,
Pierre Ronceray
,
Sadasivan Shankar
,
Iman Tavassoly
,
Shashi Thutupalli
,
Denis V. Titov
,
Jin Wang
,
Peter J. Foster
Proceedings of the National Academy of Sciences,118(26),e2026786118 (2021-06-29) , National Academy of Sciences , info:doi/10.1073/pnas.2026786118 , © 2021 The Author(s) , author
pdf
Generalized Euler-Lotka equation for correlated cell divisions
Simone Pigolotti
Physical Review E,103(6), (2021-06-30) , info:doi/10.1103/PhysRevE.103.L060402 , © 2021 American Physical Society , publisher
pdf
Length Scales in Brownian yet Non-Gaussian Dynamics
José M. Miotto
,
Simone Pigolotti
,
Aleksei V. Chechkin
,
Sándalo Roldán-Vargas
Physical Review X,11(3), (2021-07-02) , American Physical Society , info:doi/10.1103/PhysRevX.11.031002 , publisher
pdf
Search and Localization Dynamics of the CRISPR-Cas9 System
Qiao Lu
,
Deepak Bhat
,
Darya Stepanenko
,
Simone Pigolotti
Physical Review Letters,127(20),208102 (2021-11-10) , American Physical Society , info:doi/10.1103/PhysRevLett.127.208102 , © 2021 American Physical Society , publisher
pdf
Population genetics in microchannels
Anzhelika Koldaeva
,
Hsieh-Fu Tsai
,
Amy Q. Shen
,
Simone Pigolotti
Proceedings of the National Academy of Sciences,119(12),e2120821119 (2022-03-18) , National Academy of Sciences , info:doi/10.1073/pnas.2120821119 , © 2022 the Author(s). , publisher
pdf
Optimization and Fabrication of Multi-Level Microchannels for Long-Term Imaging of Bacterial Growth and Expansion
Hsieh-Fu Tsai
,
Daniel Carlson
,
Anzhelika Koldaeva
,
Simone Pigolotti
,
Amy Shen
Micromachines,13(4),576 (2022-04-07) , MDPI , info:doi/10.3390/mi13040576 , © 2022 The Authors. , publisher
pdf
Speed variations of bacterial replisomes
Deepak Bhat
,
Samuel Hauf
,
Charles Plessy
,
Yohei Yokobayashi
,
Simone Pigolotti
eLife,11,e75884 (2022-07-25) , eLife Sciences Publications, Ltd , info:doi/10.7554/eLife.75884 , © 2022 Bhat et al. , publisher
pdf
Coalescent dynamics of planktonic communities
Paula Villa Martín
,
Anzhelika Koldaeva
,
Simone Pigolotti
Physical Review E,106(4),044408 (2022-10-17) , American Physical Society , info:doi/10.1103/PhysRevE.106.044408 , © 2022 American Physical Society , publisher
pdf
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