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1 - 26 of 26 items

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Deep Sequencing Analysis of Aptazyme Variants Based on a Pistol Ribozyme

Shungo Kobori , Kei Takahashi , Yohei Yokobayashi
ACS Synthetic Biology,6(7),1283-1288 (2017-04-11) , American Chemical Society , info:doi/10.1021/acssynbio.7b00057 , © 2017 American Chemical Society , publisher

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Controlling Bdellovibrio bacteriovorus Gene Expression and Predation Using Synthetic Riboswitches

Mohammed Dwidar , Yohei Yokobayashi
ACS Synthetic Biology,6(11),2035-2041 (2017-08-16) , American Chemical Society , info:doi/10.1021/acssynbio.7b00171 , © 2017 American Chemical Society , publisher

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Large Scale Mutational and Kinetic Analysis of a Self-Hydrolyzing Deoxyribozyme

V. Dhamodharan , Shungo Kobori , Yohei Yokobayashi
ACS Chemical Biology,12(12),2940-2945 (2017-10-23) , American Chemical Society , info:doi/10.1021/acschembio.7b00621 , © 2017 American Chemical Society. , publisher

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Direct screening for ribozyme activity in mammalian cells

Yoko Nomura , Hsiao-Chiao Chien , Yohei Yokobayashi
Chemical Communications,53(93),12540-12543 (2017-11-01) , Royal Society of Chemistry , info:doi/10.1039/C7CC07815C , ©2017 The Authors. , publisher

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Analyzing and Tuning Ribozyme Activity by Deep Sequencing To Modulate Gene Expression Level in Mammalian Cells

Shungo Kobori , Yohei Yokobayashi
ACS Synthetic Biology,7(2),371-376 (2018-01-17) , American Chemical Society , info:doi/10.1021/acssynbio.7b00367 , © 2018 American Chemical Society , publisher

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Firefly Luciferase Mutant with Enhanced Activity and Thermostability

Tania Pozzo , Farhima Akter , Yoko Nomura , Angelique Y. Louie , Yohei Yokobayashi
ACS Omega,3(3),2628-2633 (2018-03-06) , American Chemical Society , info:doi/10.1021/acsomega.7b02068 , © 2018 American Chemical Society , publisher

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Optochemical control of gene expression by photocaged guanine and riboswitches

V. Dhamodharan , Yoko Nomura , Mohammed Dwidar , Yohei Yokobayashi
Chemical Communications,54(48),6181-6183 (2018-05-30) , Royal Society of Chemistry , info:doi/10.1039/C8CC02290A , © 2018 The Author(s). , publisher

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Riboswitch Signal Amplification by Controlling Plasmid Copy Number

Mohammed Dwidar , Yohei Yokobayashi
ACS Synthetic Biology,8(2),245-250 (2019-01-25) , American Chemical Society , info:doi/10.1021/acssynbio.8b00454 , © 2019 American Chemical Society , publisher

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Applications of high-throughput sequencing to analyze and engineer ribozymes

Yohei Yokobayashi
Methods,161,41-45 (2019-02-06) , Elsevier Inc , info:doi/10.1016/j.ymeth.2019.02.001 , © 2019 The Author(s). , publisher

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Self-powered RNA nanomachine driven by metastable structure

Shungo Kobori , Yoko Nomura , Yohei Yokobayashi
Nucleic Acids Research,47(11),6007-6014 (2019-05-11) , Oxford University Press on behalf of Nucleic Acids Research , info:doi/10.1093/nar/gkz364 , © 2019 The Author(s). , publisher

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Programmable Artificial Cells Using Histamine-Responsive Synthetic Riboswitch

Mohammed Dwidar , Yusuke Seike , Shungo Kobori , Charles Whitaker , Tomoaki Matsuura , Yohei Yokobayashi
Journal of the American Chemical Society,141(28),11103-11114 (2019-06-17) , American Chemical Society , info:doi/10.1021/jacs.9b03300 , © 2019 American Chemical Society. , publisher

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Aptamer-based and aptazyme-based riboswitches in mammalian cells

Yohei Yokobayashi
Current Opinion in Chemical Biology,52,72-78 (2019-06-22) , ELSEVIER , info:doi/10.1016/j.cbpa.2019.05.018 , ©2019 The Author , publisher

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Reversible Gene Regulation in Mammalian Cells Using Riboswitch-Engineered Vesicular Stomatitis Virus Vector

Kei Takahashi , Yohei Yokobayashi
ACS Synthetic Biology,8(9),1976-1982 (2019-08-15) , American Chemical Society , info:doi/10.1021/acssynbio.9b00177 , © 2019 American Chemical Society. , publisher

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Systematic minimization of RNA ligase ribozyme through large-scale design-synthesis-sequence cycles

Yoko Nomura , Yohei Yokobayashi
Nucleic Acids Research,47(17),8950-8960 (2019-08-26) , Oxford University Press on behalf of Nucleic Acids Research , info:doi/10.1093/nar/gkz729 , © 2019 The Author(s). , publisher

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Development of a histamine aptasensor for food safety monitoring

Mohammed Dwidar , Yohei Yokobayashi
Scientific Reports,9(1),16659 (2019-11-13) , Nature Research , info:doi/10.1038/s41598-019-52876-1 , © 2019 The Author(s). , publisher

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Design of Mammalian ON-Riboswitches Based on Tandemly Fused Aptamer and Ribozyme

Kamila Mustafina , Keisuke Fukunaga , Yohei Yokobayashi
ACS Synthetic Biology,9(1),19-25 (2019-12-10) , American Chemical Society , info:doi/10.1021/acssynbio.9b00371 , © 2019 American Chemical Society , ACS AuthorChoice with CC-BY-NC-ND , publisher

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Graphene based field-effect transistor biosensors functionalized using gas-phase synthesized gold nanoparticles

Eric Danielson , Vyankat A. Sontakke , Alexander J. Porkovich , Zhenwei Wang , Pawan Kumar , Zakaria Ziadi , Yohei Yokobayashi , Mukhles Sowwan
Sensors and Actuators B: Chemical,320,128432 (2020-06-09) , Elsevier B.V , info:doi/10.1016/j.snb.2020.128432 , © 2020 The Author(s) , publisher

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High-Throughput Analysis and Engineering of Ribozymes and Deoxyribozymes by Sequencing

Yohei Yokobayashi
Accounts of Chemical Research,53(12),2903-2912 (2020-11-09) , American Chemical Society , info:doi/10.1021/acs.accounts.0c00546 , © 2020 American Chemical Society. , ACS AuthorChoice with CC-BY-NC-ND. , publisher

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Directed evolution of orthogonal RNA–RBP pairs through library-vs-library in vitro selection

Keisuke Fukunaga , Yohei Yokobayashi
Nucleic Acids Research,50(2),601-616 (2021-07-05) , Oxford University Press on behalf of Nucleic Acids Research , info:doi/10.1093/nar/gkab527 , © 2021 The Author(s). , publisher

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Novel RNA Viral Vectors for Chemically Regulated Gene Expression in Embryonic Stem Cells

Narae Kim , Yohei Yokobayashi
ACS Synthetic Biology,10(11),2959-2967 (2021-10-22) , American Chemical Society , info:doi/10.1021/acssynbio.1c00214 , © 2021 American Chemical Society , This document is the Accepted Manuscript version of a Published Work that appeared in final form in ACS Synthetic Biology, copyright © American Chemical Society after peer review and technical editing by the publisher. To access the final edited and published work see https://pubs.acs.org/doi/10.1021/acssynbio.1c00214. , author

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Programmable Macroscopic Self-Assembly of DNA-Decorated Hydrogels

Vyankat A. Sontakke , Yohei Yokobayashi
Journal of the American Chemical Society,144(5),2149-2155 (2022-01-31) , American Chemical Society , info:doi/10.1021/jacs.1c10308 , © 2022 The Authors. , ACS AuthorChoice. , publisher

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High-throughput screening of cell-free riboswitches by fluorescence-activated droplet sorting

Takeshi Tabuchi , Yohei Yokobayashi
Nucleic Acids Research,gkac152 (2022-03-07) , Oxford University Press on behalf of Nucleic Acids Research , info:doi/10.1093/nar/gkac152 , © 2022 The Author(s). , publisher

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Speed variations of bacterial replisomes

Deepak Bhat , Samuel Hauf , Charles Plessy , Yohei Yokobayashi , Simone Pigolotti
eLife,11,e75884 (2022-07-25) , eLife Sciences Publications, Ltd , info:doi/10.7554/eLife.75884 , © 2022 Bhat et al. , publisher

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Identification of an ERN1 target site within EGFP mRNA

Marius W. Baeken , Yohei Yokobayashi
Journal of Cellular Biochemistry, (2022-07-31) , Wiley Periodicals LLC. , info:doi/10.1002/jcb.30314 , © 2022 The Authors. , publisher

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Analysis of the Sequence Preference of Saporin by Deep Sequencing

Samuel Hauf , Rachapun Rotrattanadumrong , Yohei Yokobayashi
ACS Chemical Biology, (2022-08-15) , American Chemical Society , info:doi/10.1021/acschembio.2c00531 , © 2022 The Author(s) , publisher

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Experimental exploration of a ribozyme neutral network using evolutionary algorithm and deep learning

Rachapun Rotrattanadumrong , Yohei Yokobayashi
Nature Communications,13(1),4847 (2022-08-17) , Nature Portfolio , info:doi/10.1038/s41467-022-32538-z , © 2022 The Author(s) , publisher

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