{"created":"2023-06-26T11:00:36.909242+00:00","id":1126,"links":{},"metadata":{"_buckets":{"deposit":"03a0f795-1c2e-4f8c-aacf-864b2c154b88"},"_deposit":{"created_by":28,"id":"1126","owners":[28],"pid":{"revision_id":0,"type":"depid","value":"1126"},"status":"published"},"_oai":{"id":"oai:oist.repo.nii.ac.jp:00001126","sets":["6:49"]},"author_link":["6273","6263","6269","6270","6262","6264","6271","6268","6261","6274","6267","6272","6265","6266"],"item_10001_biblio_info_7":{"attribute_name":"Bibliographic Information","attribute_value_mlt":[{"bibliographicIssueDates":{"bibliographicIssueDate":"2019-04-10","bibliographicIssueDateType":"Issued"},"bibliographicIssueNumber":"1","bibliographicPageEnd":"20","bibliographicPageStart":"8","bibliographicVolumeNumber":"452","bibliographic_titles":[{},{"bibliographic_title":"Developmental Biology","bibliographic_titleLang":"en"}]}]},"item_10001_creator_3":{"attribute_name":"Author","attribute_type":"creator","attribute_value_mlt":[{"creatorNames":[{"creatorName":"Mitros, Therese"}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"Lyons, Jessica B."}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"Session, Adam M."}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"Jenkins, Jerry"}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"Shu, Shengquiang"}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"Kwon, Taejoon"}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"Lane, Maura"}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"Ng, Connie"}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"Grammer, Timothy C."}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"Khokha, Mustafa K."}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"Grimwood, Jane"}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"Schmutz, Jeremy"}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"Harland, Richard M."}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"Rokhsar, Daniel S."}],"nameIdentifiers":[{}]}]},"item_10001_description_5":{"attribute_name":"Abstract","attribute_value_mlt":[{"subitem_description":"The Western clawed frog Xenopus tropicalis is a diploid model system for both frog genetics and developmental biology, complementary to the paleotetraploid X. laevis. Here we report a chromosome-scale assembly of the X. tropicalis genome, improving the previously published draft genome assembly through the use of new assembly algorithms, additional sequence data, and the addition of a dense genetic map. The improved genome enables the mapping of specific traits (e.g., the sex locus or Mendelian mutants) and the characterization of chromosome-scale synteny with other tetrapods. We also report an improved annotation of the genome that integrates deep transcriptome sequence from diverse tissues and stages. The exon-intron structures of these genes are highly conserved relative to both X. laevis and human, as are chromosomal linkages (\"synteny\") and local gene order. A network analysis of developmental gene expression will aid future studies.","subitem_description_type":"Other"}]},"item_10001_publisher_8":{"attribute_name":"Publisher","attribute_value_mlt":[{"subitem_publisher":"Elsevier Inc"}]},"item_10001_relation_13":{"attribute_name":"PubMedNo.","attribute_value_mlt":[{"subitem_relation_type":"isIdenticalTo","subitem_relation_type_id":{"subitem_relation_type_id_text":"info:pmid/30980799","subitem_relation_type_select":"PMID"}}]},"item_10001_relation_14":{"attribute_name":"DOI","attribute_value_mlt":[{"subitem_relation_type":"isIdenticalTo","subitem_relation_type_id":{"subitem_relation_type_id_text":"info:doi/10.1016/j.ydbio.2019.03.015","subitem_relation_type_select":"DOI"}}]},"item_10001_relation_16":{"attribute_name":"情報源","attribute_value_mlt":[{"subitem_relation_name":[{"subitem_relation_name_text":"https://creativecommons.org/licenses/by-nc-nd/4.0/"}]}]},"item_10001_relation_17":{"attribute_name":"Related site","attribute_value_mlt":[{"subitem_relation_type_id":{"subitem_relation_type_id_text":"https://www.sciencedirect.com/science/article/pii/S0012160618303890","subitem_relation_type_select":"URI"}}]},"item_10001_rights_15":{"attribute_name":"Rights","attribute_value_mlt":[{"subitem_rights":"© 2019 The Author(s)."}]},"item_10001_source_id_9":{"attribute_name":"ISSN","attribute_value_mlt":[{"subitem_source_identifier":"0012-1606","subitem_source_identifier_type":"ISSN"}]},"item_10001_version_type_20":{"attribute_name":"Author's flag","attribute_value_mlt":[{"subitem_version_resource":"http://purl.org/coar/version/c_970fb48d4fbd8a85","subitem_version_type":"VoR"}]},"item_files":{"attribute_name":"ファイル情報","attribute_type":"file","attribute_value_mlt":[{"accessrole":"open_date","date":[{"dateType":"Available","dateValue":"2019-10-24"}],"displaytype":"detail","filename":"Mitros-2019-A chromosome-scale genome assembly.pdf","filesize":[{"value":"1.8 MB"}],"format":"application/pdf","license_note":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International  (https://creativecommons.org/licenses/by-nc-nd/4.0/)","licensetype":"license_note","mimetype":"application/pdf","url":{"label":"Mitros-2019-A chromosome-scale genome assembly","url":"https://oist.repo.nii.ac.jp/record/1126/files/Mitros-2019-A chromosome-scale genome assembly.pdf"},"version_id":"0b41ec32-9387-4f63-a607-4530040c0d51"}]},"item_language":{"attribute_name":"言語","attribute_value_mlt":[{"subitem_language":"eng"}]},"item_resource_type":{"attribute_name":"資源タイプ","attribute_value_mlt":[{"resourcetype":"journal article","resourceuri":"http://purl.org/coar/resource_type/c_6501"}]},"item_title":"A chromosome-scale genome assembly and dense genetic map for Xenopus tropicalis","item_titles":{"attribute_name":"タイトル","attribute_value_mlt":[{"subitem_title":"A chromosome-scale genome assembly and dense genetic map for Xenopus tropicalis","subitem_title_language":"en"}]},"item_type_id":"10001","owner":"28","path":["49"],"pubdate":{"attribute_name":"公開日","attribute_value":"2019-10-24"},"publish_date":"2019-10-24","publish_status":"0","recid":"1126","relation_version_is_last":true,"title":["A chromosome-scale genome assembly and dense genetic map for Xenopus tropicalis"],"weko_creator_id":"28","weko_shared_id":28},"updated":"2023-06-26T11:56:14.914358+00:00"}