{"created":"2023-06-26T11:01:26.309200+00:00","id":2141,"links":{},"metadata":{"_buckets":{"deposit":"df65966a-4cb3-4add-a055-db9e0b633ef7"},"_deposit":{"created_by":30,"id":"2141","owners":[30],"pid":{"revision_id":0,"type":"depid","value":"2141"},"status":"published"},"_oai":{"id":"oai:oist.repo.nii.ac.jp:00002141","sets":["6:59"]},"author_link":["14101","14100","14098","14097","14099"],"item_10001_biblio_info_7":{"attribute_name":"Bibliographic Information","attribute_value_mlt":[{"bibliographicIssueDates":{"bibliographicIssueDate":"2021-04-27","bibliographicIssueDateType":"Issued"},"bibliographicIssueNumber":"4","bibliographicPageStart":"e1008914","bibliographicVolumeNumber":"17","bibliographic_titles":[{},{"bibliographic_title":"PLOS Computational Biology","bibliographic_titleLang":"en"}]}]},"item_10001_creator_3":{"attribute_name":"Author","attribute_type":"creator","attribute_value_mlt":[{"creatorNames":[{"creatorName":"Hebert, Laetitia"}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"Ahamed, Tosif"}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"Costa, Antonio C."}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"O’Shaughnessy, Liam"}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"Stephens, Greg J."}],"nameIdentifiers":[{}]}]},"item_10001_description_5":{"attribute_name":"Abstract","attribute_value_mlt":[{"subitem_description":"An important model system for understanding genes, neurons and behavior, the nematode worm C. elegans naturally moves through a variety of complex postures, for which estimation from video data is challenging. We introduce an open-source Python package, WormPose, for 2D pose estimation in C. elegans, including self-occluded, coiled shapes. We leverage advances in machine vision afforded from convolutional neural networks and introduce a synthetic yet realistic generative model for images of worm posture, thus avoiding the need for human-labeled training. WormPose is effective and adaptable for imaging conditions across worm tracking efforts. We quantify pose estimation using synthetic data as well as N2 and mutant worms in on-food conditions. We further demonstrate WormPose by analyzing long ( approximately ～8 hour), fast-sampled ( approximately ～ 30 Hz) recordings of on-food N2 worms to provide a posture-scale analysis of roaming/dwelling behaviors.","subitem_description_type":"Other"}]},"item_10001_publisher_8":{"attribute_name":"Publisher","attribute_value_mlt":[{"subitem_publisher":"Public Library of Science "}]},"item_10001_relation_13":{"attribute_name":"PubMedNo.","attribute_value_mlt":[{"subitem_relation_type":"isIdenticalTo","subitem_relation_type_id":{"subitem_relation_type_id_text":"info:pmid/33905413","subitem_relation_type_select":"PMID"}}]},"item_10001_relation_14":{"attribute_name":"DOI","attribute_value_mlt":[{"subitem_relation_type":"isIdenticalTo","subitem_relation_type_id":{"subitem_relation_type_id_text":"info:doi/10.1371/journal.pcbi.1008914","subitem_relation_type_select":"DOI"}}]},"item_10001_relation_17":{"attribute_name":"Related site","attribute_value_mlt":[{"subitem_relation_type_id":{"subitem_relation_type_id_text":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1008914","subitem_relation_type_select":"URI"}}]},"item_10001_rights_15":{"attribute_name":"Rights","attribute_value_mlt":[{"subitem_rights":"© 2021 Hebert et al. "}]},"item_10001_source_id_9":{"attribute_name":"ISSN","attribute_value_mlt":[{"subitem_source_identifier":"1553-7358","subitem_source_identifier_type":"ISSN"},{"subitem_source_identifier":"1553-734X","subitem_source_identifier_type":"ISSN"}]},"item_10001_version_type_20":{"attribute_name":"Author's flag","attribute_value_mlt":[{"subitem_version_resource":"http://purl.org/coar/version/c_970fb48d4fbd8a85","subitem_version_type":"VoR"}]},"item_files":{"attribute_name":"ファイル情報","attribute_type":"file","attribute_value_mlt":[{"accessrole":"open_date","date":[{"dateType":"Available","dateValue":"2021-05-28"}],"displaytype":"detail","filename":"Hebert-2021-WormPose_ Image synthesis and conv.pdf","filesize":[{"value":"2.2 MB"}],"format":"application/pdf","license_note":"Creative Commons Attribution 4.0 International(https://creativecommons.org/licenses/by/4.0/)","licensetype":"license_note","mimetype":"application/pdf","url":{"label":"Hebert-2021-WormPose_ Image synthesis and conv","url":"https://oist.repo.nii.ac.jp/record/2141/files/Hebert-2021-WormPose_ Image synthesis and conv.pdf"},"version_id":"c05d7ecc-58e8-45cd-b424-6a20c60296b8"}]},"item_language":{"attribute_name":"言語","attribute_value_mlt":[{"subitem_language":"eng"}]},"item_resource_type":{"attribute_name":"資源タイプ","attribute_value_mlt":[{"resourcetype":"journal article","resourceuri":"http://purl.org/coar/resource_type/c_6501"}]},"item_title":"WormPose: Image synthesis and convolutional networks for pose estimation in C. elegans","item_titles":{"attribute_name":"タイトル","attribute_value_mlt":[{"subitem_title":"WormPose: Image synthesis and convolutional networks for pose estimation in C. elegans","subitem_title_language":"en"}]},"item_type_id":"10001","owner":"30","path":["59"],"pubdate":{"attribute_name":"公開日","attribute_value":"2021-05-28"},"publish_date":"2021-05-28","publish_status":"0","recid":"2141","relation_version_is_last":true,"title":["WormPose: Image synthesis and convolutional networks for pose estimation in C. elegans"],"weko_creator_id":"30","weko_shared_id":30},"updated":"2023-06-26T11:36:29.386002+00:00"}