{"created":"2023-06-26T11:01:55.506760+00:00","id":2681,"links":{},"metadata":{"_buckets":{"deposit":"6b1b1485-ffd2-449d-9938-c31c404c1ad7"},"_deposit":{"created_by":31,"id":"2681","owners":[31],"pid":{"revision_id":0,"type":"depid","value":"2681"},"status":"published"},"_oai":{"id":"oai:oist.repo.nii.ac.jp:00002681","sets":["6:72"]},"author_link":["17323","17327","17322","17326","17324","17325"],"item_10001_biblio_info_7":{"attribute_name":"Bibliographic Information","attribute_value_mlt":[{"bibliographicIssueDates":{"bibliographicIssueDate":"2022-05-25","bibliographicIssueDateType":"Issued"},"bibliographicPageStart":"107520","bibliographicVolumeNumber":"173","bibliographic_titles":[{},{"bibliographic_title":"Molecular Phylogenetics and Evolution","bibliographic_titleLang":"en"}]}]},"item_10001_creator_3":{"attribute_name":"Author","attribute_type":"creator","attribute_value_mlt":[{"creatorNames":[{"creatorName":"Hellemans, Simon"}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"Wang, Menglin"}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"Hasegawa, Nonno"}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"Šobotník, Jan"}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"Scheffrahn, Rudolf H."}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"Bourguignon, Thomas"}],"nameIdentifiers":[{}]}]},"item_10001_description_5":{"attribute_name":"Abstract","attribute_value_mlt":[{"subitem_description":"The phylogenetic history of termites has been investigated using mitochondrial genomes and transcriptomes. However, both sets of markers have specific limitations. Mitochondrial genomes represent a single genetic marker likely to yield phylogenetic trees presenting incongruences with species trees, and transcriptomes can only be obtained from well-preserved samples. In contrast, ultraconserved elements (UCEs) include a great many independent markers that can be retrieved from poorly preserved samples. Here, we designed termite-specific baits targeting 50,616 UCE loci. We tested our UCE bait set on 42 samples of termites and three samples of Cryptocercus, for which we generated low-coverage highly-fragmented genome assemblies and successfully extracted in silico between 3,426 to 42,860 non-duplicated UCEs per sample. Our maximum likelihood phylogenetic tree, reconstructed using the 5,934 UCE loci retrieved from upward of 75% of samples, was congruent with transcriptome-based phylogenies, demonstrating that our UCE bait set is reliable and phylogenetically informative. Combined with non-destructive DNA extraction protocols, our UCE bait set provides the tool needed to carry out a global taxonomic revision of termites based on poorly preserved specimens such as old museum samples. The Termite UCE database is maintained at: https://github.com/oist/TER-UCE-DB/.","subitem_description_type":"Other"}]},"item_10001_publisher_8":{"attribute_name":"Publisher","attribute_value_mlt":[{"subitem_publisher":"Elsevier Inc."}]},"item_10001_relation_13":{"attribute_name":"PubMedNo.","attribute_value_mlt":[{"subitem_relation_type":"isVersionOf","subitem_relation_type_id":{"subitem_relation_type_id_text":"info:pmid/35577300","subitem_relation_type_select":"PMID"}}]},"item_10001_relation_14":{"attribute_name":"DOI","attribute_value_mlt":[{"subitem_relation_type":"isVersionOf","subitem_relation_type_id":{"subitem_relation_type_id_text":"info:doi/10.1016/j.ympev.2022.107520","subitem_relation_type_select":"DOI"}}]},"item_10001_relation_17":{"attribute_name":"Related site","attribute_value_mlt":[{"subitem_relation_type_id":{"subitem_relation_type_id_text":"https://www.sciencedirect.com/science/article/pii/S1055790322001336","subitem_relation_type_select":"URI"}}]},"item_10001_rights_15":{"attribute_name":"Rights","attribute_value_mlt":[{"subitem_rights":"© 2022 Elsevier Inc. All rights reserved."}]},"item_10001_source_id_9":{"attribute_name":"ISSN","attribute_value_mlt":[{"subitem_source_identifier":"1055-7903","subitem_source_identifier_type":"ISSN"}]},"item_10001_version_type_20":{"attribute_name":"Author's flag","attribute_value_mlt":[{"subitem_version_resource":"http://purl.org/coar/version/c_ab4af688f83e57aa","subitem_version_type":"AM"}]},"item_files":{"attribute_name":"ファイル情報","attribute_type":"file","attribute_value_mlt":[{"accessrole":"open_date","date":[{"dateType":"Available","dateValue":"2023-05-25"}],"displaytype":"detail","filename":"OISTIR_UCEs in termites_220302-SUB-REVISED-220.pdf","filesize":[{"value":"480.0 kB"}],"format":"application/pdf","license_note":"CC BY-NC-ND 4.0\nCreative Commons Attribution-NonCommercial-NoDerivatives 4.0 International(https://creativecommons.org/licenses/by-nc-nd/4.0/)","licensetype":"license_note","mimetype":"application/pdf","url":{"label":"OISTIR_UCEs in termites_220302-SUB-REVISED-220","url":"https://oist.repo.nii.ac.jp/record/2681/files/OISTIR_UCEs in termites_220302-SUB-REVISED-220.pdf"},"version_id":"ae2f2747-fe60-4e11-9eed-32b4a2fb82f0"}]},"item_keyword":{"attribute_name":"キーワード","attribute_value_mlt":[{"subitem_subject":"Data Mining","subitem_subject_scheme":"Other"},{"subitem_subject":"Isoptera","subitem_subject_scheme":"Other"},{"subitem_subject":"Phylogenomics","subitem_subject_scheme":"Other"},{"subitem_subject":"Mitochondrial genome","subitem_subject_scheme":"Other"},{"subitem_subject":"Nuclear genome","subitem_subject_scheme":"Other"},{"subitem_subject":"Taxonomy","subitem_subject_scheme":"Other"}]},"item_language":{"attribute_name":"言語","attribute_value_mlt":[{"subitem_language":"eng"}]},"item_resource_type":{"attribute_name":"資源タイプ","attribute_value_mlt":[{"resourcetype":"journal article","resourceuri":"http://purl.org/coar/resource_type/c_6501"}]},"item_title":"Using ultraconserved elements to reconstruct the termite tree of life","item_titles":{"attribute_name":"タイトル","attribute_value_mlt":[{"subitem_title":"Using ultraconserved elements to reconstruct the termite tree of life","subitem_title_language":"en"}]},"item_type_id":"10001","owner":"31","path":["72"],"pubdate":{"attribute_name":"公開日","attribute_value":"2022-07-05"},"publish_date":"2022-07-05","publish_status":"0","recid":"2681","relation_version_is_last":true,"title":["Using ultraconserved elements to reconstruct the termite tree of life"],"weko_creator_id":"31","weko_shared_id":31},"updated":"2023-06-26T11:26:35.346461+00:00"}