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ENMeval 2.0: Redesigned for customizable and reproducible modeling of species’ niches and distributions
https://oist.repo.nii.ac.jp/records/2178
https://oist.repo.nii.ac.jp/records/2178d67acf21-1c84-49aa-a857-b119d7c421a9
名前 / ファイル | ライセンス | アクション |
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Kass-2021-ENMeval 2.0_ redesigned for customiz (670.4 kB)
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Item type | 学術雑誌論文 / Journal Article(1) | |||||
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公開日 | 2021-08-02 | |||||
タイトル | ||||||
言語 | en | |||||
タイトル | ENMeval 2.0: Redesigned for customizable and reproducible modeling of species’ niches and distributions | |||||
言語 | ||||||
言語 | eng | |||||
キーワード | ||||||
言語 | en | |||||
主題Scheme | Other | |||||
主題 | ecological niche model | |||||
キーワード | ||||||
言語 | en | |||||
主題Scheme | Other | |||||
主題 | cross-validation | |||||
キーワード | ||||||
言語 | en | |||||
主題Scheme | Other | |||||
主題 | metadata | |||||
キーワード | ||||||
言語 | en | |||||
主題Scheme | Other | |||||
主題 | model evaluation | |||||
キーワード | ||||||
言語 | en | |||||
主題Scheme | Other | |||||
主題 | model tuning | |||||
キーワード | ||||||
言語 | en | |||||
主題Scheme | Other | |||||
主題 | software | |||||
キーワード | ||||||
言語 | en | |||||
主題Scheme | Other | |||||
主題 | spatial | |||||
キーワード | ||||||
言語 | en | |||||
主題Scheme | Other | |||||
主題 | species distribution model | |||||
資源タイプ | ||||||
資源タイプ識別子 | http://purl.org/coar/resource_type/c_6501 | |||||
資源タイプ | journal article | |||||
著者(英) |
Kass, Jamie M.
× Kass, Jamie M.× Muscarella, Robert× Galante, Peter J.× Bohl, Corentin L.× Pinilla‐Buitrago, Gonzalo E.× Boria, Robert A.× Soley‐Guardia, Mariano× Anderson, Robert P. |
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書誌情報 |
en : Methods in Ecology and Evolution 発行日 2021-06-04 |
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抄録 | ||||||
内容記述タイプ | Other | |||||
内容記述 | 1.Quantitative evaluations to optimize complexity have become standard for avoiding overfitting of ecological niche models (ENMs) that estimate species’ potential geographic distributions. ENMeval was the first R package to make such evaluations (often termed model tuning) widely accessible for the Maxent algorithm. It also provided multiple methods for partitioning occurrence data and reported various performance metrics. 2.Requests by users, recent developments in the field, and needs for software compatibility led to a major redesign and expansion. We additionally conducted a literature review to investigate trends in ENMeval use (2015–2019). 3.ENMeval 2.0 has a new object-oriented structure for adding other algorithms, enables customizing algorithmic settings and performance metrics, generates extensive metadata, implements a null-model approach to quantify significance and effect sizes, and includes features to increase the breadth of analyses and visualizations. In our literature review, we found insufficient reporting of model performance and parameterization, heavy reliance on model selection with AICc and low utilization of spatial cross-validation; we explain how ENMeval 2.0 can help address these issues. 4.This redesigned and expanded version can promote progress in the field and improve the information available for decision-making. |
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出版者 | ||||||
出版者 | Wiley | |||||
出版者 | ||||||
出版者 | British Ecological Society | |||||
ISSN | ||||||
収録物識別子タイプ | ISSN | |||||
収録物識別子 | 2041-210X | |||||
DOI | ||||||
関連タイプ | isVersionOf | |||||
識別子タイプ | DOI | |||||
関連識別子 | info:doi/10.1111/2041-210X.13628 | |||||
権利 | ||||||
権利情報 | This is the peer reviewed version of the following article: Jamie M. Kass, Robert Muscarella, Peter J. Galante, Corentin L. Bohl, Gonzalo E. Pinilla-Buitrago, Robert A. Boria, Mariano Soley-Guardia, Robert P. Anderson, ENMeval 2.0: Redesigned for customizable and reproducible modeling of species’ niches and distributions, Methods in Ecology and Evolution, 2021, which has been published in final form at https://doi.org/10.1111/2041-210X.13628. This article may be used for non-commercial purposes in accordance with Wiley Terms and Conditions for Use of Self-Archived Versions. | |||||
関連サイト | ||||||
識別子タイプ | URI | |||||
関連識別子 | https://besjournals.onlinelibrary.wiley.com/doi/10.1111/2041-210X.13628 | |||||
著者版フラグ | ||||||
出版タイプ | AM | |||||
出版タイプResource | http://purl.org/coar/version/c_ab4af688f83e57aa |