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A chromosome-scale genome assembly and dense genetic map for Xenopus tropicalis
https://oist.repo.nii.ac.jp/records/1126
https://oist.repo.nii.ac.jp/records/11265d6cc746-5b89-423b-83cd-b89a6c141230
名前 / ファイル | ライセンス | アクション |
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Mitros-2019-A chromosome-scale genome assembly (1.8 MB)
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Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (https://creativecommons.org/licenses/by-nc-nd/4.0/)
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Item type | 学術雑誌論文 / Journal Article(1) | |||||
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公開日 | 2019-10-24 | |||||
タイトル | ||||||
言語 | en | |||||
タイトル | A chromosome-scale genome assembly and dense genetic map for Xenopus tropicalis | |||||
言語 | ||||||
言語 | eng | |||||
資源タイプ | ||||||
資源タイプ識別子 | http://purl.org/coar/resource_type/c_6501 | |||||
資源タイプ | journal article | |||||
著者(英) |
Mitros, Therese
× Mitros, Therese× Lyons, Jessica B.× Session, Adam M.× Jenkins, Jerry× Shu, Shengquiang× Kwon, Taejoon× Lane, Maura× Ng, Connie× Grammer, Timothy C.× Khokha, Mustafa K.× Grimwood, Jane× Schmutz, Jeremy× Harland, Richard M.× Rokhsar, Daniel S. |
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書誌情報 |
en : Developmental Biology 巻 452, 号 1, p. 8-20, 発行日 2019-04-10 |
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抄録 | ||||||
内容記述タイプ | Other | |||||
内容記述 | The Western clawed frog Xenopus tropicalis is a diploid model system for both frog genetics and developmental biology, complementary to the paleotetraploid X. laevis. Here we report a chromosome-scale assembly of the X. tropicalis genome, improving the previously published draft genome assembly through the use of new assembly algorithms, additional sequence data, and the addition of a dense genetic map. The improved genome enables the mapping of specific traits (e.g., the sex locus or Mendelian mutants) and the characterization of chromosome-scale synteny with other tetrapods. We also report an improved annotation of the genome that integrates deep transcriptome sequence from diverse tissues and stages. The exon-intron structures of these genes are highly conserved relative to both X. laevis and human, as are chromosomal linkages ("synteny") and local gene order. A network analysis of developmental gene expression will aid future studies. | |||||
出版者 | ||||||
出版者 | Elsevier Inc | |||||
ISSN | ||||||
収録物識別子タイプ | ISSN | |||||
収録物識別子 | 0012-1606 | |||||
PubMed番号 | ||||||
関連タイプ | isIdenticalTo | |||||
識別子タイプ | PMID | |||||
関連識別子 | info:pmid/30980799 | |||||
DOI | ||||||
関連タイプ | isIdenticalTo | |||||
識別子タイプ | DOI | |||||
関連識別子 | info:doi/10.1016/j.ydbio.2019.03.015 | |||||
権利 | ||||||
権利情報 | © 2019 The Author(s). | |||||
情報源 | ||||||
関連名称 | https://creativecommons.org/licenses/by-nc-nd/4.0/ | |||||
関連サイト | ||||||
識別子タイプ | URI | |||||
関連識別子 | https://www.sciencedirect.com/science/article/pii/S0012160618303890 | |||||
著者版フラグ | ||||||
出版タイプ | VoR | |||||
出版タイプResource | http://purl.org/coar/version/c_970fb48d4fbd8a85 |