WEKO3
アイテム
{"_buckets": {"deposit": "dc8e0e6a-a1b4-40d5-bf44-a9a0a1958a45"}, "_deposit": {"created_by": 29, "id": "1547", "owners": [29], "pid": {"revision_id": 0, "type": "depid", "value": "1547"}, "status": "published"}, "_oai": {"id": "oai:oist.repo.nii.ac.jp:00001547", "sets": ["51"]}, "author_link": ["9360", "9361", "9365", "9363", "9364", "9362", "9359"], "item_10001_biblio_info_7": {"attribute_name": "Bibliographic Information", "attribute_value_mlt": [{"bibliographicIssueDates": {"bibliographicIssueDate": "2018-05-30", "bibliographicIssueDateType": "Issued"}, "bibliographicIssueNumber": "3", "bibliographicPageEnd": "229", "bibliographicPageStart": "219", "bibliographicVolumeNumber": "203", "bibliographic_titles": [{}, {"bibliographic_title": "Journal of Structural Biology", "bibliographic_titleLang": "en"}]}]}, "item_10001_creator_3": {"attribute_name": "Author", "attribute_type": "creator", "attribute_value_mlt": [{"creatorNames": [{"creatorName": "Takeuchi, Takeshi"}], "nameIdentifiers": [{"nameIdentifier": "9359", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Plasseraud, Laurent"}], "nameIdentifiers": [{"nameIdentifier": "9360", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Ziegler-Devin, Isabelle"}], "nameIdentifiers": [{"nameIdentifier": "9361", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Brosse, Nicolas"}], "nameIdentifiers": [{"nameIdentifier": "9362", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Shinzato, Chuya"}], "nameIdentifiers": [{"nameIdentifier": "9363", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Satoh, Noriyuki"}], "nameIdentifiers": [{"nameIdentifier": "9364", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Marin, Frédéric"}], "nameIdentifiers": [{"nameIdentifier": "9365", "nameIdentifierScheme": "WEKO"}]}]}, "item_10001_description_5": {"attribute_name": "Abstract", "attribute_value_mlt": [{"subitem_description": "To construct calcium carbonate skeletons of sophisticated architecture, scleractinian corals secrete an extracellular skeletal organic matrix (SOM) from aboral ectodermal cells. The SOM, which is composed of proteins, saccharides, and lipids, performs functions critical for skeleton formation. Even though polysaccharides constitute the major component of the SOM, its contribution to coral skeleton formation is poorly understood. To this end, we analyzed the SOM of the massive colonial coral, Porites australiensis, the skeleton of which has drawn great research interest because it records environmental conditions throughout the life of the colony. The coral skeleton was extensively cleaned, decalcified with acetic acid, and organic fractions were separated based on solubility. These fractions were analyzed using various techniques, including SDS-PAGE, FT-IR, in vitro crystallization, CHNS analysis, chromatography analysis of monosaccharide and enzyme-linked lectin assay (ELLA). We confirmed the acidic nature of SOM and the presence of sulphate, which is thought to initiate CaCO3 crystallization. In order to analyze glycan structures, we performed ELLA on the soluble SOM for the first time and found that it exhibits strong specificity to Datura stramonium lectin (DSL). Furthermore, using biotinylated DSL with anti-biotin antibody conjugated to nanogold, in situ localization of DSL-binding polysaccharides in the P. australiensis skeleton was performed. Signals were distributed on the surfaces of fiber-like crystals of the skeleton, suggesting that polysaccharides may modulate crystal shape. Our study emphasizes the importance of sugar moieties in biomineralization of scleractinian corals.", "subitem_description_type": "Other"}]}, "item_10001_publisher_8": {"attribute_name": "Publisher", "attribute_value_mlt": [{"subitem_publisher": "Elsevier"}]}, "item_10001_relation_13": {"attribute_name": "PubMedNo.", "attribute_value_mlt": [{"subitem_relation_type": "isVersionOf", "subitem_relation_type_id": {"subitem_relation_type_id_text": "info:pmid/29859330", "subitem_relation_type_select": "PMID"}}]}, "item_10001_relation_14": {"attribute_name": "DOI", "attribute_value_mlt": [{"subitem_relation_type": "isVersionOf", "subitem_relation_type_id": {"subitem_relation_type_id_text": "info:doi/10.1016/j.jsb.2018.05.011", "subitem_relation_type_select": "DOI"}}]}, "item_10001_relation_16": {"attribute_name": "情報源", "attribute_value_mlt": [{"subitem_relation_name": [{"subitem_relation_name_text": "https://creativecommons.org/licenses/by-nc-nd/4.0/"}]}]}, "item_10001_relation_17": {"attribute_name": "Related site", "attribute_value_mlt": [{"subitem_relation_type_id": {"subitem_relation_type_id_text": "https://doi.org/10.1016/j.jsb.2018.05.011", "subitem_relation_type_select": "DOI"}}]}, "item_10001_rights_15": {"attribute_name": "Rights", "attribute_value_mlt": [{"subitem_rights": "© 2018 Elsevier Inc."}]}, "item_10001_source_id_9": {"attribute_name": "ISSN", "attribute_value_mlt": [{"subitem_source_identifier": "1047-8477", "subitem_source_identifier_type": "ISSN"}, {"subitem_source_identifier": "1095-8657", "subitem_source_identifier_type": "ISSN"}]}, "item_10001_version_type_20": {"attribute_name": "Author\u0027s flag", "attribute_value_mlt": [{"subitem_version_resource": "http://purl.org/coar/version/c_ab4af688f83e57aa", "subitem_version_type": "AM"}]}, "item_files": {"attribute_name": "ファイル情報", "attribute_type": "file", "attribute_value_mlt": [{"accessrole": "open_date", "date": [{"dateType": "Available", "dateValue": "2019-05-30"}], "displaytype": "detail", "download_preview_message": "", "file_order": 0, "filename": "Manuscript.pdf", "filesize": [{"value": "8.0 MB"}], "format": "application/pdf", "future_date_message": "", "is_thumbnail": false, "licensefree": "Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International(https://creativecommons.org/licenses/by-nc-nd/4.0/)", "licensetype": "license_free", "mimetype": "application/pdf", "size": 8000000.0, "url": {"label": "Manuscript", "url": "https://oist.repo.nii.ac.jp/record/1547/files/Manuscript.pdf"}, "version_id": "92f9c40e-53ab-4387-9e56-4cf2b5888582"}]}, "item_language": {"attribute_name": "言語", "attribute_value_mlt": [{"subitem_language": "eng"}]}, "item_resource_type": {"attribute_name": "資源タイプ", "attribute_value_mlt": [{"resourcetype": "journal article", "resourceuri": "http://purl.org/coar/resource_type/c_6501"}]}, "item_title": "Biochemical characterization of the skeletal matrix of the massive coral, Porites australiensis – The saccharide moieties and their localization", "item_titles": {"attribute_name": "タイトル", "attribute_value_mlt": [{"subitem_title": "Biochemical characterization of the skeletal matrix of the massive coral, Porites australiensis – The saccharide moieties and their localization", "subitem_title_language": "en"}]}, "item_type_id": "10001", "owner": "29", "path": ["51"], "permalink_uri": "https://oist.repo.nii.ac.jp/records/1547", "pubdate": {"attribute_name": "公開日", "attribute_value": "2020-06-15"}, "publish_date": "2020-06-15", "publish_status": "0", "recid": "1547", "relation": {}, "relation_version_is_last": true, "title": ["Biochemical characterization of the skeletal matrix of the massive coral, Porites australiensis – The saccharide moieties and their localization"], "weko_shared_id": 29}
Biochemical characterization of the skeletal matrix of the massive coral, Porites australiensis – The saccharide moieties and their localization
https://oist.repo.nii.ac.jp/records/1547
https://oist.repo.nii.ac.jp/records/15477ec12f2c-e49f-4957-9e82-479e4e35ae5f
名前 / ファイル | ライセンス | アクション |
---|---|---|
![]() |
Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International(https://creativecommons.org/licenses/by-nc-nd/4.0/)
|
Item type | 学術雑誌論文 / Journal Article(1) | |||||
---|---|---|---|---|---|---|
公開日 | 2020-06-15 | |||||
タイトル | ||||||
言語 | en | |||||
タイトル | Biochemical characterization of the skeletal matrix of the massive coral, Porites australiensis – The saccharide moieties and their localization | |||||
言語 | ||||||
言語 | eng | |||||
資源タイプ | ||||||
資源タイプ識別子 | http://purl.org/coar/resource_type/c_6501 | |||||
資源タイプ | journal article | |||||
著者(英) |
Takeuchi, Takeshi
× Takeuchi, Takeshi× Plasseraud, Laurent× Ziegler-Devin, Isabelle× Brosse, Nicolas× Shinzato, Chuya× Satoh, Noriyuki× Marin, Frédéric |
|||||
書誌情報 |
en : Journal of Structural Biology 巻 203, 号 3, p. 219-229, 発行日 2018-05-30 |
|||||
抄録 | ||||||
内容記述タイプ | Other | |||||
内容記述 | To construct calcium carbonate skeletons of sophisticated architecture, scleractinian corals secrete an extracellular skeletal organic matrix (SOM) from aboral ectodermal cells. The SOM, which is composed of proteins, saccharides, and lipids, performs functions critical for skeleton formation. Even though polysaccharides constitute the major component of the SOM, its contribution to coral skeleton formation is poorly understood. To this end, we analyzed the SOM of the massive colonial coral, Porites australiensis, the skeleton of which has drawn great research interest because it records environmental conditions throughout the life of the colony. The coral skeleton was extensively cleaned, decalcified with acetic acid, and organic fractions were separated based on solubility. These fractions were analyzed using various techniques, including SDS-PAGE, FT-IR, in vitro crystallization, CHNS analysis, chromatography analysis of monosaccharide and enzyme-linked lectin assay (ELLA). We confirmed the acidic nature of SOM and the presence of sulphate, which is thought to initiate CaCO3 crystallization. In order to analyze glycan structures, we performed ELLA on the soluble SOM for the first time and found that it exhibits strong specificity to Datura stramonium lectin (DSL). Furthermore, using biotinylated DSL with anti-biotin antibody conjugated to nanogold, in situ localization of DSL-binding polysaccharides in the P. australiensis skeleton was performed. Signals were distributed on the surfaces of fiber-like crystals of the skeleton, suggesting that polysaccharides may modulate crystal shape. Our study emphasizes the importance of sugar moieties in biomineralization of scleractinian corals. | |||||
出版者 | ||||||
出版者 | Elsevier | |||||
ISSN | ||||||
収録物識別子タイプ | ISSN | |||||
収録物識別子 | 1047-8477 | |||||
ISSN | ||||||
収録物識別子タイプ | ISSN | |||||
収録物識別子 | 1095-8657 | |||||
PubMed番号 | ||||||
関連タイプ | isVersionOf | |||||
識別子タイプ | PMID | |||||
関連識別子 | info:pmid/29859330 | |||||
DOI | ||||||
関連タイプ | isVersionOf | |||||
識別子タイプ | DOI | |||||
関連識別子 | info:doi/10.1016/j.jsb.2018.05.011 | |||||
権利 | ||||||
権利情報 | © 2018 Elsevier Inc. | |||||
情報源 | ||||||
関連名称 | https://creativecommons.org/licenses/by-nc-nd/4.0/ | |||||
関連サイト | ||||||
識別子タイプ | DOI | |||||
関連識別子 | https://doi.org/10.1016/j.jsb.2018.05.011 | |||||
著者版フラグ | ||||||
出版タイプ | AM | |||||
出版タイプResource | http://purl.org/coar/version/c_ab4af688f83e57aa |