{"_buckets": {"deposit": "1939d25c-5868-4d86-b70a-520fc786cf2f"}, "_deposit": {"created_by": 30, "id": "1954", "owners": [30], "pid": {"revision_id": 0, "type": "depid", "value": "1954"}, "status": "published"}, "_oai": {"id": "oai:oist.repo.nii.ac.jp:00001954", "sets": ["44"]}, "author_link": ["12846", "12845", "12844"], "item_10001_biblio_info_7": {"attribute_name": "Bibliographic Information", "attribute_value_mlt": [{"bibliographicIssueDates": {"bibliographicIssueDate": "2021-01-14", "bibliographicIssueDateType": "Issued"}, "bibliographicIssueNumber": "1", "bibliographicPageStart": "54", "bibliographicVolumeNumber": "22", "bibliographic_titles": [{}, {"bibliographic_title": "BMC Genomics", "bibliographic_titleLang": "en"}]}]}, "item_10001_creator_3": {"attribute_name": "Author", "attribute_type": "creator", "attribute_value_mlt": [{"creatorNames": [{"creatorName": "Hasegawa, Nonno"}], "nameIdentifiers": [{"nameIdentifier": "12844", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Techer, Maeva"}], "nameIdentifiers": [{"nameIdentifier": "12845", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Mikheyev, Alexander S."}], "nameIdentifiers": [{"nameIdentifier": "12846", "nameIdentifierScheme": "WEKO"}]}]}, "item_10001_description_5": {"attribute_name": "Abstract", "attribute_value_mlt": [{"subitem_description": "Background The honey bee parasite, Varroa destructor, is a leading cause of honey bee population declines. In addition to being an obligate ectoparasitic mite, Varroa carries several viruses that infect honey bees and act as the proximal cause of colony collapses. Nevertheless, until recently, studies of Varroa have been limited by the paucity of genomic tools. Lab- and field-based methods exploiting such methods are still nascent. This study developed a set of methods for preserving Varroa DNA and RNA from the field to the lab and processing them into sequencing libraries. We performed preservation experiments in which Varroa mites were immersed in TRIzol, RNAlater, and absolute ethanol for preservation periods up to 21 days post-treatment to assess DNA and RNA integrity. \nResults For both DNA and RNA, mites preserved in TRIzol and RNAlater at room temperature degraded within 10 days post-treatment. Mites preserved in ethanol at room temperature and 4 degrees C remained intact through 21 days. Varroa mite DNA and RNA libraries were created and sequenced for ethanol preserved samples, 15 and 21 days post-treatment. All DNA sequences mapped to the V. destructor genome at above 95% on average, while RNA sequences mapped to V. destructor, but also sometimes to high levels of the deformed-wing virus and to various organisms. \nConclusions Ethanolic preservation of field-collected mites is inexpensive and simple, and allows them to be shipped and processed successfully in the lab for a wide variety of sequencing applications. It appears to preserve RNA from both Varroa and at least some of the viruses it vectors.", "subitem_description_type": "Other"}]}, "item_10001_publisher_8": {"attribute_name": "Publisher", "attribute_value_mlt": [{"subitem_publisher": "BMC "}]}, "item_10001_relation_13": {"attribute_name": "PubMedNo.", "attribute_value_mlt": [{"subitem_relation_type": "isIdenticalTo", "subitem_relation_type_id": {"subitem_relation_type_id_text": "info:pmid/33446105", "subitem_relation_type_select": "PMID"}}]}, "item_10001_relation_14": {"attribute_name": "DOI", "attribute_value_mlt": [{"subitem_relation_type": "isIdenticalTo", "subitem_relation_type_id": {"subitem_relation_type_id_text": "info:doi/10.1186/s12864-020-07363-7", "subitem_relation_type_select": "DOI"}}]}, "item_10001_relation_17": {"attribute_name": "Related site", "attribute_value_mlt": [{"subitem_relation_type_id": {"subitem_relation_type_id_text": "https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-020-07363-7", "subitem_relation_type_select": "URI"}}]}, "item_10001_rights_15": {"attribute_name": "Rights", "attribute_value_mlt": [{"subitem_rights": "© 2020 The Author(s)."}]}, "item_10001_source_id_9": {"attribute_name": "ISSN", "attribute_value_mlt": [{"subitem_source_identifier": "1471-2164", "subitem_source_identifier_type": "ISSN"}]}, "item_10001_version_type_20": {"attribute_name": "Author\u0027s flag", "attribute_value_mlt": [{"subitem_version_resource": "http://purl.org/coar/version/c_970fb48d4fbd8a85", "subitem_version_type": "VoR"}]}, "item_files": {"attribute_name": "ファイル情報", "attribute_type": "file", "attribute_value_mlt": [{"accessrole": "open_date", "date": [{"dateType": "Available", "dateValue": "2021-03-02"}], "displaytype": "detail", "download_preview_message": "", "file_order": 0, "filename": "Hasegawa-2021-A toolkit for studying Varroa ge.pdf", "filesize": [{"value": "2.4 MB"}], "format": "application/pdf", "future_date_message": "", "is_thumbnail": false, "licensefree": "Creative Commons Attribution 4.0 International(https://creativecommons.org/licenses/by/4.0/)", "licensetype": "license_free", "mimetype": "application/pdf", "size": 2400000.0, "url": {"label": "Hasegawa-2021-A toolkit for studying Varroa ge", "url": "https://oist.repo.nii.ac.jp/record/1954/files/Hasegawa-2021-A toolkit for studying Varroa ge.pdf"}, "version_id": "fd645290-806f-483b-b7fc-3ec24fc891cf"}]}, "item_language": {"attribute_name": "言語", "attribute_value_mlt": [{"subitem_language": "eng"}]}, "item_resource_type": {"attribute_name": "資源タイプ", "attribute_value_mlt": [{"resourcetype": "journal article", "resourceuri": "http://purl.org/coar/resource_type/c_6501"}]}, "item_title": "A toolkit for studying Varroa genomics and transcriptomics: preservation, extraction, and sequencing library preparation", "item_titles": {"attribute_name": "タイトル", "attribute_value_mlt": [{"subitem_title": "A toolkit for studying Varroa genomics and transcriptomics: preservation, extraction, and sequencing library preparation", "subitem_title_language": "en"}]}, "item_type_id": "10001", "owner": "30", "path": ["44"], "permalink_uri": "https://oist.repo.nii.ac.jp/records/1954", "pubdate": {"attribute_name": "公開日", "attribute_value": "2021-03-02"}, "publish_date": "2021-03-02", "publish_status": "0", "recid": "1954", "relation": {}, "relation_version_is_last": true, "title": ["A toolkit for studying Varroa genomics and transcriptomics: preservation, extraction, and sequencing library preparation"], "weko_shared_id": 30}