WEKO3
アイテム
{"_buckets": {"deposit": "22f294f7-9613-4c71-97cf-103e6d9cc9f1"}, "_deposit": {"created_by": 32, "id": "2344", "owners": [32], "pid": {"revision_id": 0, "type": "depid", "value": "2344"}, "status": "published"}, "_oai": {"id": "oai:oist.repo.nii.ac.jp:00002344", "sets": ["52"]}, "author_link": ["15479", "15477", "15478", "15480"], "item_10001_biblio_info_7": {"attribute_name": "Bibliographic Information", "attribute_value_mlt": [{"bibliographicIssueDates": {"bibliographicIssueDate": "2021-10-16", "bibliographicIssueDateType": "Issued"}, "bibliographic_titles": [{}, {"bibliographic_title": "New Phytologist", "bibliographic_titleLang": "en"}]}]}, "item_10001_creator_3": {"attribute_name": "Author", "attribute_type": "creator", "attribute_value_mlt": [{"creatorNames": [{"creatorName": "Miryeganeh, Matin"}], "nameIdentifiers": [{"nameIdentifier": "15477", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Marlétaz, Ferdinand"}], "nameIdentifiers": [{"nameIdentifier": "15478", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Gavriouchkina, Daria"}], "nameIdentifiers": [{"nameIdentifier": "15479", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Saze, Hidetoshi"}], "nameIdentifiers": [{"nameIdentifier": "15480", "nameIdentifierScheme": "WEKO"}]}]}, "item_10001_description_5": {"attribute_name": "Abstract", "attribute_value_mlt": [{"subitem_description": "Summary\n・Mangroves are adapted to harsh environments, such as high ultraviolet (UV) light, low nutrition, and fluctuating salinity in coastal zones. However, little is known about the transcriptomic and epigenomic basis of the resilience of mangroves due to limited available genome resources.\n・We performed a de novo genome assembly and in natura epigenome analyses of the mangrove Bruguiera gymnorhiza, one of the dominant mangrove species. We also performed the first genome-guided transcriptome assembly for mangrove species.\n・The 309 Mb of the genome is predicted to encode 34 403 genes and has a repeat content of 48%. Depending on its growing environment, the natural B. gymnorhiza population showed drastic morphological changes associated with expression changes in thousands of genes. Moreover, high-salinity environments induced genome-wide DNA hypermethylation of transposable elements (TEs) in the B. gymnorhiza. DNA hypermethylation was concurrent with the transcriptional regulation of chromatin modifier genes, suggesting robust epigenome regulation of TEs in the B. gymnorhiza genome under high-salinity environments.\n・The genome and epigenome data in this study provide novel insights into the epigenome regulation of mangroves and a better understanding of the adaptation of plants to fluctuating, harsh natural environments.", "subitem_description_type": "Other"}]}, "item_10001_publisher_8": {"attribute_name": "Publisher", "attribute_value_mlt": [{"subitem_publisher": "New Phytologist Foundation"}, {"subitem_publisher": "John Wiley \u0026 Sons, Inc."}]}, "item_10001_relation_13": {"attribute_name": "PubMedNo.", "attribute_value_mlt": [{"subitem_relation_type": "isIdenticalTo", "subitem_relation_type_id": {"subitem_relation_type_id_text": "info:pmid/34532854", "subitem_relation_type_select": "PMID"}}]}, "item_10001_relation_14": {"attribute_name": "DOI", "attribute_value_mlt": [{"subitem_relation_type": "isIdenticalTo", "subitem_relation_type_id": {"subitem_relation_type_id_text": "info:doi/10.1111/nph.17738", "subitem_relation_type_select": "DOI"}}]}, "item_10001_relation_17": {"attribute_name": "Related site", "attribute_value_mlt": [{"subitem_relation_type_id": {"subitem_relation_type_id_text": "https://nph.onlinelibrary.wiley.com/doi/10.1111/nph.17738", "subitem_relation_type_select": "URI"}}]}, "item_10001_rights_15": {"attribute_name": "Rights", "attribute_value_mlt": [{"subitem_rights": "© 2021 The Author(s)."}]}, "item_10001_source_id_9": {"attribute_name": "ISSN", "attribute_value_mlt": [{"subitem_source_identifier": "1469-8137", "subitem_source_identifier_type": "ISSN"}, {"subitem_source_identifier": "0028-646X", "subitem_source_identifier_type": "ISSN"}]}, "item_10001_version_type_20": {"attribute_name": "Author\u0027s flag", "attribute_value_mlt": [{"subitem_version_resource": "http://purl.org/coar/version/c_970fb48d4fbd8a85", "subitem_version_type": "VoR"}]}, "item_files": {"attribute_name": "ファイル情報", "attribute_type": "file", "attribute_value_mlt": [{"accessrole": "open_date", "date": [{"dateType": "Available", "dateValue": "2021-10-27"}], "displaytype": "detail", "download_preview_message": "", "file_order": 0, "filename": "Miryeganeh-De novo genome assembly and in natu.pdf", "filesize": [{"value": "6.8 MB"}], "format": "application/pdf", "future_date_message": "", "is_thumbnail": false, "licensefree": "Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (https://creativecommons.org/licenses/by-nc-nd/4.0/)", "licensetype": "license_free", "mimetype": "application/pdf", "size": 6800000.0, "url": {"label": "Miryeganeh-De novo genome assembly and in natu", "url": "https://oist.repo.nii.ac.jp/record/2344/files/Miryeganeh-De novo genome assembly and in natu.pdf"}, "version_id": "002a4c20-85cc-47ae-a222-c7a04ee7f976"}]}, "item_keyword": {"attribute_name": "キーワード", "attribute_value_mlt": [{"subitem_subject": "abiotic stress", "subitem_subject_language": "en", "subitem_subject_scheme": "Other"}, {"subitem_subject": "DNA methylation", "subitem_subject_language": "en", "subitem_subject_scheme": "Other"}, {"subitem_subject": "epigenome", "subitem_subject_language": "en", "subitem_subject_scheme": "Other"}, {"subitem_subject": "mangrove genome", "subitem_subject_language": "en", "subitem_subject_scheme": "Other"}, {"subitem_subject": "salt stress", "subitem_subject_language": "en", "subitem_subject_scheme": "Other"}, {"subitem_subject": "transposable elements", "subitem_subject_language": "en", "subitem_subject_scheme": "Other"}]}, "item_language": {"attribute_name": "言語", "attribute_value_mlt": [{"subitem_language": "eng"}]}, "item_resource_type": {"attribute_name": "資源タイプ", "attribute_value_mlt": [{"resourcetype": "journal article", "resourceuri": "http://purl.org/coar/resource_type/c_6501"}]}, "item_title": "De novo genome assembly and in natura epigenomics reveal salinity‐induced DNA methylation in the mangrove tree Bruguiera gymnorhiza", "item_titles": {"attribute_name": "タイトル", "attribute_value_mlt": [{"subitem_title": "De novo genome assembly and in natura epigenomics reveal salinity‐induced DNA methylation in the mangrove tree Bruguiera gymnorhiza", "subitem_title_language": "en"}]}, "item_type_id": "10001", "owner": "32", "path": ["52"], "permalink_uri": "https://oist.repo.nii.ac.jp/records/2344", "pubdate": {"attribute_name": "公開日", "attribute_value": "2021-10-27"}, "publish_date": "2021-10-27", "publish_status": "0", "recid": "2344", "relation": {}, "relation_version_is_last": true, "title": ["De novo genome assembly and in natura epigenomics reveal salinity‐induced DNA methylation in the mangrove tree Bruguiera gymnorhiza"], "weko_shared_id": 32}
De novo genome assembly and in natura epigenomics reveal salinity‐induced DNA methylation in the mangrove tree Bruguiera gymnorhiza
https://oist.repo.nii.ac.jp/records/2344
https://oist.repo.nii.ac.jp/records/23448ca1b74b-a74a-41b5-8edb-68213a197a61
名前 / ファイル | ライセンス | アクション |
---|---|---|
Miryeganeh-De novo genome assembly and in natu (6.8 MB)
|
Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (https://creativecommons.org/licenses/by-nc-nd/4.0/)
|
Item type | 学術雑誌論文 / Journal Article(1) | |||||
---|---|---|---|---|---|---|
公開日 | 2021-10-27 | |||||
タイトル | ||||||
言語 | en | |||||
タイトル | De novo genome assembly and in natura epigenomics reveal salinity‐induced DNA methylation in the mangrove tree Bruguiera gymnorhiza | |||||
言語 | ||||||
言語 | eng | |||||
キーワード | ||||||
言語 | en | |||||
主題Scheme | Other | |||||
主題 | abiotic stress | |||||
キーワード | ||||||
言語 | en | |||||
主題Scheme | Other | |||||
主題 | DNA methylation | |||||
キーワード | ||||||
言語 | en | |||||
主題Scheme | Other | |||||
主題 | epigenome | |||||
キーワード | ||||||
言語 | en | |||||
主題Scheme | Other | |||||
主題 | mangrove genome | |||||
キーワード | ||||||
言語 | en | |||||
主題Scheme | Other | |||||
主題 | salt stress | |||||
キーワード | ||||||
言語 | en | |||||
主題Scheme | Other | |||||
主題 | transposable elements | |||||
資源タイプ | ||||||
資源タイプ識別子 | http://purl.org/coar/resource_type/c_6501 | |||||
資源タイプ | journal article | |||||
著者(英) |
Miryeganeh, Matin
× Miryeganeh, Matin× Marlétaz, Ferdinand× Gavriouchkina, Daria× Saze, Hidetoshi |
|||||
書誌情報 |
en : New Phytologist 発行日 2021-10-16 |
|||||
抄録 | ||||||
内容記述タイプ | Other | |||||
内容記述 | Summary ・Mangroves are adapted to harsh environments, such as high ultraviolet (UV) light, low nutrition, and fluctuating salinity in coastal zones. However, little is known about the transcriptomic and epigenomic basis of the resilience of mangroves due to limited available genome resources. ・We performed a de novo genome assembly and in natura epigenome analyses of the mangrove Bruguiera gymnorhiza, one of the dominant mangrove species. We also performed the first genome-guided transcriptome assembly for mangrove species. ・The 309 Mb of the genome is predicted to encode 34 403 genes and has a repeat content of 48%. Depending on its growing environment, the natural B. gymnorhiza population showed drastic morphological changes associated with expression changes in thousands of genes. Moreover, high-salinity environments induced genome-wide DNA hypermethylation of transposable elements (TEs) in the B. gymnorhiza. DNA hypermethylation was concurrent with the transcriptional regulation of chromatin modifier genes, suggesting robust epigenome regulation of TEs in the B. gymnorhiza genome under high-salinity environments. ・The genome and epigenome data in this study provide novel insights into the epigenome regulation of mangroves and a better understanding of the adaptation of plants to fluctuating, harsh natural environments. |
|||||
出版者 | ||||||
出版者 | New Phytologist Foundation | |||||
出版者 | ||||||
出版者 | John Wiley & Sons, Inc. | |||||
ISSN | ||||||
収録物識別子タイプ | ISSN | |||||
収録物識別子 | 1469-8137 | |||||
ISSN | ||||||
収録物識別子タイプ | ISSN | |||||
収録物識別子 | 0028-646X | |||||
PubMed番号 | ||||||
関連タイプ | isIdenticalTo | |||||
識別子タイプ | PMID | |||||
関連識別子 | info:pmid/34532854 | |||||
DOI | ||||||
関連タイプ | isIdenticalTo | |||||
識別子タイプ | DOI | |||||
関連識別子 | info:doi/10.1111/nph.17738 | |||||
権利 | ||||||
権利情報 | © 2021 The Author(s). | |||||
関連サイト | ||||||
識別子タイプ | URI | |||||
関連識別子 | https://nph.onlinelibrary.wiley.com/doi/10.1111/nph.17738 | |||||
著者版フラグ | ||||||
出版タイプ | VoR | |||||
出版タイプResource | http://purl.org/coar/version/c_970fb48d4fbd8a85 |