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The chromosome-scale genome assembly of the yellowtail clownfishAmphiprion clarkiiprovides insights into the melanic pigmentation of anemonefish
https://oist.repo.nii.ac.jp/records/2949
https://oist.repo.nii.ac.jp/records/2949b6670de2-29c9-44f7-8c62-a34d74aa45ba
名前 / ファイル | ライセンス | アクション |
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Moore-2023-The chromosome-scale genome assembl (6.8 MB)
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Item type | 学術雑誌論文 / Journal Article(1) | |||||
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公開日 | 2023-05-30 | |||||
タイトル | ||||||
言語 | en | |||||
タイトル | The chromosome-scale genome assembly of the yellowtail clownfishAmphiprion clarkiiprovides insights into the melanic pigmentation of anemonefish | |||||
言語 | ||||||
言語 | eng | |||||
キーワード | ||||||
言語 | en | |||||
主題Scheme | Other | |||||
主題 | anemonefish | |||||
キーワード | ||||||
言語 | en | |||||
主題Scheme | Other | |||||
主題 | Amphiprion clarkii | |||||
キーワード | ||||||
言語 | en | |||||
主題Scheme | Other | |||||
主題 | chromosome-scale assembly | |||||
キーワード | ||||||
言語 | en | |||||
主題Scheme | Other | |||||
主題 | genome | |||||
キーワード | ||||||
言語 | en | |||||
主題Scheme | Other | |||||
主題 | erbb3b | |||||
キーワード | ||||||
言語 | en | |||||
主題Scheme | Other | |||||
主題 | melanism | |||||
キーワード | ||||||
言語 | en | |||||
主題Scheme | Other | |||||
主題 | pigmentation | |||||
資源タイプ | ||||||
資源タイプ識別子 | http://purl.org/coar/resource_type/c_6501 | |||||
資源タイプ | journal article | |||||
アクセス権 | ||||||
アクセス権 | open access | |||||
アクセス権URI | http://purl.org/coar/access_right/c_abf2 | |||||
著者(英) |
Moore, Billy
× Moore, Billy× Herrera, Marcela× Gairin, Emma× Li, Chengze× Miura, Saori× Jolly, Jeffrey× Mercader, Manon× Izumiyama, Michael× Kawai, Erina× Ravasi, Timothy× Laudet, Vincent× Ryu, Taewoo |
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書誌情報 |
en : G3 Genes|Genomes|Genetics 巻 13, 号 3, 発行日 2023-01-10 |
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抄録 | ||||||
内容記述タイプ | Abstract | |||||
内容記述 | Anemonefish are an emerging group of model organisms for studying genetic, ecological, evolutionary, and developmental traits of coral reef fish. The yellowtail clownfish Amphiprion clarkii possesses species-specific characteristics such as inter-species co-habitation, high intra-species color variation, no anemone specificity, and a broad geographic distribution, that can increase our understanding of anemonefish evolutionary history, behavioral strategies, fish-anemone symbiosis, and color pattern evolution. Despite its position as an emerging model species, the genome of A. clarkii is yet to be published. Using PacBio long-read sequencing and Hi-C chromatin capture technology, we generated a high-quality chromosome-scale genome assembly initially comprised of 1,840 contigs with an N50 of 1,203,211 bp. These contigs were successfully anchored into 24 chromosomes of 843,582,782 bp and annotated with 25,050 protein-coding genes encompassing 97.0% of conserved actinopterygian genes, making the quality and completeness of this genome the highest among all published anemonefish genomes to date. Transcriptomic analysis identified tissue-specific gene expression patterns, with the brain and optic lobe having the largest number of expressed genes. Further analyses revealed higher copy numbers of erbb3b (a gene involved in melanocyte development) in A. clarkii compared with other anemonefish, thus suggesting a possible link between erbb3b and the natural melanism polymorphism observed in A. clarkii. The publication of this high-quality genome, along with A. clarkii's many unique traits, position this species as an ideal model organism for addressing scientific questions across a range of disciplines. | |||||
出版者 | ||||||
出版者 | Oxford University Press | |||||
出版者 | ||||||
出版者 | Genetics Society of America | |||||
ISSN | ||||||
収録物識別子タイプ | EISSN | |||||
収録物識別子 | 2160-1836 | |||||
PubMed番号 | ||||||
関連タイプ | isIdenticalTo | |||||
識別子タイプ | PMID | |||||
関連識別子 | 36626199 | |||||
DOI | ||||||
関連タイプ | isIdenticalTo | |||||
識別子タイプ | DOI | |||||
関連識別子 | 10.1093/g3journal/jkad002 | |||||
権利 | ||||||
権利情報 | © 2023 The Author(s). | |||||
情報源 | ||||||
関連名称 | https://creativecommons.org/licenses/by/4.0/ | |||||
関連サイト | ||||||
関連タイプ | isIdenticalTo | |||||
識別子タイプ | URI | |||||
関連識別子 | https://academic.oup.com/g3journal/article/13/3/jkad002/6982751?login=true | |||||
著者版フラグ | ||||||
出版タイプ | VoR | |||||
出版タイプResource | http://purl.org/coar/version/c_970fb48d4fbd8a85 |